PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 47486
Common NameMICPUCDRAFT_47486
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 389aa    MW: 39711.5 Da    PI: 10.3989
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
47486genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-145498347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+ l++ + ++lG+g+W+ I+r++ + Rt+ q+ s+ qky
            47486 54 PWTEEEHRLFLLGLQKLGKGDWRGISRHFVQSRTPTQVASHAQKY 98
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.93847103IPR017930Myb domain
SuperFamilySSF466895.46E-1849104IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-1850102IPR006447Myb domain, plants
SMARTSM007177.6E-1251101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-115197IPR009057Homeodomain-like
CDDcd001675.95E-105499No hitNo description
PfamPF002491.2E-115498IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDSLVAAATE GMRKASSADE IKEAPKPMAP PRNEDGHMSD SAVAPTRERK KGVPWTEEEH  60
RLFLLGLQKL GKGDWRGISR HFVQSRTPTQ VASHAQKYFI RQNNLNKRKR RSSLFDIISE  120
PSDGENVVNI ANGAAMMKST DETNNGKHAK KPPLAANAGG LSRAFAGGIP PAGPAFAGYN  180
PTGMPPPASF SSHGRRPPST STGDSAVEAA AATIAALAGT SPHAAAGYHA AAAAAAARER  240
GARTAAAAPT SAEAAVAHAQ ATAAAQAQAQ AQAAMSNPWG GLMAQMMAGP GAAYNMGPGA  300
AASQMNIHQA QANWMAHYHQ FLQQMQHAVA AAPQQMPWPQ MAGAGGLTFP TMAPIGHQTS  360
APMATGGGDG ATSGATAAKG SDKPQAAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003059136.10.0myb transcription factor
TrEMBLC1MU520.0C1MU52_MICPC; Myb transcription factor
STRINGXP_003059136.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.15e-30MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]