PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 47201
Common NameMICPUCDRAFT_47201
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family GATA
Protein Properties Length: 715aa    MW: 71529.4 Da    PI: 6.8701
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
47201genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.54.9e-15226263136
   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
            C nCgtt+  Tpl+Rrgp+g ++LCnaCGl ++++g++
  47201 226 CGNCGTTShaTPLMRRGPNGVRSLCNACGLWFARRGTM 263
            9********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.08E-11220267No hitNo description
PROSITE profilePS5011412.347220266IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-10220273IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-15224266IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.00E-15225280No hitNo description
PfamPF003202.8E-12226263IPR000679Zinc finger, GATA-type
PROSITE patternPS003440226253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MVMASALLAD AKLDPSTPIP GHGDSDANSS RRRSGRLRTI HAKQAELKAK QIAFRCHAAP  60
HAEVRVVALG WAREDPSDAA AADETTKPPS AATPGDDASA APSTPKKEDD DETPPPAVLV  120
PLGYRAEGVL FNEPLRAWID RGGNHFVSWG AAGDGRAAVS TPPGGASSTK EAVRCIVDEL  180
KRRVDHGVCA VLPPLPPPVA PIAPRRHAGD GSSIGGGARA KNNRACGNCG TTSHATPLMR  240
RGPNGVRSLC NACGLWFARR GTMRPVEGAP AAPERPEIAA AAQDEEGAIV ARKDARDRAN  300
SDDQKSAAAN AGGVFDASPP QPATSGGSLP PAPASPSRTT DPAAPPASES SGGDGATVKS  360
EGTVAAAAAA AATPLAVDAQ LAAAMKAEND AYVAAMAKHA VALAAHEKSE KERALAYVAS  420
ALHAMSAETT TGDGVFGYAD APVQQALLAL KAAREDADEE TIEKAEKAIA AATAATEALR  480
KTAAAWDNVG AASSPPGAGG GTKSVARNPT GRNGRGGGRG AKREHPSGGR GGRGSAGGSS  540
HAIKRHQPDA AFQARLALAK RNAGAQLRQN SSSNLVGMGH AYADHGGARA GVGAVAGTMP  600
YQPMYAFGVA PPVGMRSSAH GRSSPAPMVN GWGDDAGPDA ADAFKDESLG VVGGGMISFD  660
ADLSVSGQPQ GGFGDALADP FGGAGDVFGG ADDGLGLLLD APGGAGFVME GGLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058356.10.0predicted protein
TrEMBLC1MSN10.0C1MSN1_MICPC; Predicted protein
STRINGXP_003058356.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP813455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-12GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]