PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 194367
Common NameMICPUCDRAFT_40875
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 455aa    MW: 51139.9 Da    PI: 10.3708
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
194367genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.2e-10237279146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+WT+eE   l ++ +q G + W+ I + mg  R +  c+++w++
           194367 237 KGAWTEEEKTTLMNLYEQKGAK-WAEIGAAMG--RAGGACRDKWRS 279
                      79********************.********8..9*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.16149233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-5151168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-5204237IPR009057Homeodomain-like
SuperFamilySSF466893.02E-14211280IPR009057Homeodomain-like
PROSITE profilePS5129411.459232285IPR017930Myb domain
SMARTSM007173.1E-5236283IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-11238280IPR009057Homeodomain-like
PfamPF139214.8E-11240294No hitNo description
PROSITE profilePS500907.642284353IPR017877Myb-like domain
SuperFamilySSF466895.39E-9284368IPR009057Homeodomain-like
SMARTSM007171.5E-6284355IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-10286371IPR009057Homeodomain-like
CDDcd001671.10E-4287352No hitNo description
SMARTSM007174.6358410IPR001005SANT/Myb domain
PROSITE profilePS500905.924360408IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MTGLPSTELP ARLELGPADA ADDRERRRRE KRERKEKKAE RKDRKRKKEK QKLSGELAVA  60
GGGNAVACGD SRNTVADVIN WECKMEGRRR EKRERKEKKA ERKDRKRKKK KQRLSGELAV  120
AGGGNAIACG GYRNTVADVN WDCKMEGQKF GPWSASEVAD IKARIKDWAN AHGHSGDVES  180
GNFDFLFGRR QKLGGRGAGL SDAERKAFLE IATGFPNRNP KQIYAYVTRH LDPSNYKGAW  240
TEEEKTTLMN LYEQKGAKWA EIGAAMGRAG GACRDKWRSI SVERNGKWTE DEKTTLSTLV  300
NEYFAEQKAT PGRGAGDGQE HRELLDNIPW SIIAQKHGSR TEAQCMQRWY RVSMGAIDTG  360
NWAAGDDKLL ITALRKTNAT HEVEVDWNSV SVPSRSLTQV KRRFKEMKRF IRKNPHRIKN  420
LSLADMLDKM TEEFAPELIG VDLTLPGQPV LSAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A9e-11205356139279DNA-binding protein reb1
5eyb_B9e-11205356139279DNA-binding protein reb1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429ERRRRE
24048RKDRKRKKE
34348RKRKKE
44349RKRKKEK
587109RRREKRERKEKKAERKDRKRKKK
6101109RKDRKRKKK
7104108RKRKK
8104110RKRKKKK
9106112RKKKKQR
10106113RKKKKQRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060613.10.0predicted protein
TrEMBLC1MYR40.0C1MYR4_MICPC; Predicted protein
STRINGXP_003060613.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-13MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]