PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 192534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | bZIP | ||||||||
Protein Properties | Length: 226aa MW: 23942.7 Da PI: 9.7224 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 77.6 | 1.5e-24 | 121 | 184 | 1 | 64 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL +v++L++eN +L+ el++lk+ + +l+++++ 192534 121 ERELKRQRRKQSNRESARRSRLRKQAECEELGGRVDALSTENITLRAELKRLKDACGSLETDNK 184 89*********************************************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.2E-19 | 116 | 180 | No hit | No description |
Pfam | PF00170 | 5.1E-22 | 121 | 183 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.4E-20 | 121 | 185 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.082 | 123 | 186 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.25E-12 | 124 | 179 | No hit | No description |
CDD | cd14702 | 1.49E-18 | 126 | 176 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 128 | 143 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MQPQAQFYAQ QQQQQQQMNP YAMWPQQAMM NPYNGMYPGY MGAGYGAANA GADASAAVKA 60 EAGKTGFDPA QLAQWQQTVA AQQRAQSGAA AAQTAAVASK AGGVGGVTNG TNGAPEMWMD 120 ERELKRQRRK QSNRESARRS RLRKQAECEE LGGRVDALST ENITLRAELK RLKDACGSLE 180 TDNKTLADKL KVIKGDDVEA AAEGGKKTSP TKKGGKAADA DGGKD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 143 | RRSRLRK |
2 | 137 | 144 | RRSRLRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003055732.1 | 1e-107 | predicted protein | ||||
TrEMBL | C1MIW1 | 1e-105 | C1MIW1_MICPC; Predicted protein | ||||
STRING | XP_003055732.1 | 1e-106 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4426 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.2 | 2e-25 | G-box binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 192534 |