PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 180038
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 364aa    MW: 39890.5 Da    PI: 8.6578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
180038genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.9e-11184209126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              yk  +C+++ +tG+C yGd CkF+H+
   180038 184 YKPDICKDYKETGYCGYGDGCKFMHD 209
              899**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.59E-10180215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793183211IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6183210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-12184214IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8184209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.4E-11261330IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578507.66E-11267313No hitNo description
CDDcd001621.75E-6267312No hitNo description
PfamPF146341.2E-6268310IPR001841Zinc finger, RING-type
SMARTSM001849.1E-6268308IPR001841Zinc finger, RING-type
PROSITE profilePS500899.775268308IPR001841Zinc finger, RING-type
PROSITE patternPS005180286295IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGDHDAGPST TAPSGGGGGG GFKKKGKFGR GNVRKRAVAD DGSDGEDAAR GAGRSSVVAP  60
AEKKKRANAI GGTTARDDKE KLQVFTFAGD RTLQQRGDGG ATAELQIDTE KHLDGRAMRE  120
KVLKTAAERA EGFVDDKQYK GRNNYVDYRA GFRQEHSIAS EKGAGAHGPM RASSNVRMTF  180
IMDYKPDICK DYKETGYCGY GDGCKFMHDR GDYKHGWQLD KEWDQKEKLR KEKLQALERM  240
ERALGEDGEA LRGSDDEYDS DDDVPPTCGI CDEPWDKVRD PVVTRCKHYF CEHCALRHNA  300
KEKACATCGK PTGGTFNTAK EITRRVKEMK ESGQTRWGKK KAKQAKVVDG EFGVVGSQGW  360
LLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M9e-552233419325RING finger protein 113A
5z58_M9e-552233419325RING finger protein 113A
6ff4_t9e-552233419325RING finger protein 113A
6ff7_t9e-552233419325RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060898.10.0predicted protein, partial
TrEMBLC1MZ560.0C1MZ56_MICPC; Predicted protein (Fragment)
STRINGXP_003060898.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.12e-87C3H family protein