PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 133691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | NF-YC | ||||||||
Protein Properties | Length: 91aa MW: 9869.57 Da PI: 7.5233 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.6 | 1.5e-14 | 9 | 83 | 23 | 97 |
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 arik++++adedv +i+ +Pvl+ +a +lf+ el + a + +t + aa+ ++fdfl div 133691 9 CARIKRLMQADEDVGKIAQATPVLMVRALDLFVEELMNATTSIATAHSAKTASAGHLRAAIMGNEKFDFLKDIVE 83 38**********************************99988899999999**********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.3E-13 | 10 | 69 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 6.2E-18 | 10 | 87 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.2E-21 | 10 | 83 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MPPKKNPLCA RIKRLMQADE DVGKIAQATP VLMVRALDLF VEELMNATTS IATAHSAKTA 60 SAGHLRAAIM GNEKFDFLKD IVEAVPDLPQ P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003056791.1 | 6e-50 | predicted protein, partial | ||||
Swissprot | Q10315 | 4e-24 | BUR6_SCHPO; Transcription regulator complex subunit bur6 | ||||
TrEMBL | C1MPB4 | 1e-48 | C1MPB4_MICPC; Predicted protein (Fragment) | ||||
STRING | XP_003056791.1 | 2e-49 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3343 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 4e-22 | NF-YC family protein |
Link Out ? help Back to Top | |
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Phytozome | 133691 |