PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 13206
Common NameMICPUCDRAFT_13206
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 355aa    MW: 39344.5 Da    PI: 9.3855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
13206genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06527427
             ---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
             e+C++++  G C+ G+ C+F+H++
    13206  5 EICKYYLH-GACRNGAGCRFSHSM 27
             89**7777.*************95 PP
2zf-CCCH25.22.9e-083054126
             --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
             +k   C ++++ G C yGd+C++ H+
    13206 30 PKSTVCAYYLA-GNCAYGDKCRYDHV 54
             57789******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.981128IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-6426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4527IPR000571Zinc finger, CCCH-type
PfamPF146080.016625No hitNo description
PROSITE profilePS5010315.8072956IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-62955IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-63154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-53153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-63153IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.65E-12186261No hitNo description
Gene3DG3DSA:3.30.40.101.2E-11187259IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.11E-4192256No hitNo description
SMARTSM001845.8E-7193254IPR001841Zinc finger, RING-type
PfamPF000975.7E-8193254IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.047193255IPR001841Zinc finger, RING-type
PROSITE patternPS005180217226IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.835284313IPR000571Zinc finger, CCCH-type
SMARTSM003560.009285312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4289310IPR000571Zinc finger, CCCH-type
PfamPF146081.3289310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGTKEICKYY LHGACRNGAG CRFSHSMDAP KSTVCAYYLA GNCAYGDKCR YDHVRPPKVR  60
RRAFARFCAL ERNRRSSTAA GAAARMTSGG TTTTRVGPSV VAFARSLRPL SFLLSTDDKI  120
LIRSSNYTID SFHDGDARGE RDVVVVRSLL RRSRRCRHCC NHNFRRSRAH ESASSRATRE  180
DEARAAASAE VECGICLEVV HEKPRIGDRR FGLLSGCDHA FCLACIRDWR DGGVAGKDAA  240
TASALDQARK CPICRAQSHY TVPSTYWPRD EIDKAMIVGE YKRRMDKIPC RNFDYGDGHC  300
PFGSSCFYAH LLRDGSRASE DVRKTTDAEG NLNIVGGIRL SDFLDTSAGR RALR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003054926.10.0predicted protein
TrEMBLC1MHB20.0C1MHB2_MICPC; Predicted protein
STRINGXP_003054926.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-38C3H family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]