PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MapolyY_B0021.1.p
Common NameM88B7.2
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GATA
Protein Properties Length: 394aa    MW: 42728.3 Da    PI: 6.7988
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MapolyY_B0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.5e-16276312135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg+
  MapolyY_B0021.1.p 276 CVHCGIGErsTPMMRRGPSGPRTLCNACGLMWANKGV 312
                        ****866666************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.816131166IPR010399Tify domain
SMARTSM009798.3E-12131166IPR010399Tify domain
PfamPF062002.8E-14133165IPR010399Tify domain
PROSITE profilePS5101713.225200242IPR010402CCT domain
PfamPF062032.5E-15200242IPR010402CCT domain
SMARTSM004014.8E-13270323IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.091270318IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12271324No hitNo description
Gene3DG3DSA:3.30.50.109.6E-16275317IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.33E-15275324No hitNo description
PfamPF003207.9E-14276312IPR000679Zinc finger, GATA-type
PROSITE patternPS003440276303IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSDADHIAQA IHAHHTMHSH TLGHSHGLSI GHSHGHHAQP HDLHHVQQQA QVEAEAQAQA  60
EAQVHESAEL VRHGHVHGHN GHAHGLHHGE DNGVGVDDHD DDPGDEEGLD EAEMHSDGAH  120
PGDAPNQLAV RNQGTTQLTL SYQGEVYVFD TVPPEKVQAV LLLLGGREIP PGMSGVNVSG  180
HHHTNKGVSE LPARMNMPQR LASLTRFREK RKERCYDKKI RYTVRKEVAQ RMQRKKGQFA  240
SSRTLGEEGG PVSSWDGSQI PGQQVGTGVG QQEVTCVHCG IGERSTPMMR RGPSGPRTLC  300
NACGLMWANK GVLRDLSKNP PLPGAPQQPH MLHQQQIIMR QQQQIAALQH SLEHVPQNGT  360
ESGMGSQQME LELQHNRESQ PSSADGGTAV ATA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6030440.0AY603044.1 Marchantia polymorpha male-specific transcription factor M88B7.2 (M88B7.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395439.11e-151GATA transcription factor 28-like isoform X1
RefseqXP_024395440.11e-151GATA transcription factor 28-like isoform X1
RefseqXP_024395441.11e-151GATA transcription factor 28-like isoform X1
RefseqXP_024395442.11e-151GATA transcription factor 28-like isoform X1
RefseqXP_024395443.11e-151GATA transcription factor 28-like isoform X1
SwissprotQ8GXL73e-81GAT24_ARATH; GATA transcription factor 24
TrEMBLQ6J3Q50.0Q6J3Q5_MARPO; Male-specific transcription factor M88B7.2
STRINGPP1S69_103V6.21e-147(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]