PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0474s0001.4.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family B3
Protein Properties Length: 654aa    MW: 72104.9 Da    PI: 7.4987
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0474s0001.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.8e-16485571284
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          +k+lt+ dv+++gr++lpkk ae+h   ++ +e++++ l+d +  r+W +k+++  ++ks++y+l+ ++ eF+k +gL++gD +++++
  Mapoly0474s0001.4.p 485 QKQLTTTDVGSLGRIILPKKEAETHlpHLPDKEGIEMCLYDHDVdRTWIMKYRFwpNNKSRMYLLE-NTGEFAKYHGLQQGDLLLIYR 571
                          79*************************7788899*******6655*******99777777777777.****************99983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-23478572IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20483571IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-22484583No hitNo description
SMARTSM010191.9E-15484585IPR003340B3 DNA binding domain
PROSITE profilePS508639.122484585IPR003340B3 DNA binding domain
PfamPF023623.0E-12485571IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MHSTVSWRPA PSGCMSGTLN DVLMFTSRNR PATLEMSEDK DVEDKDLNPI EWQLLRDGVN  60
GTNSRPKPSD PDFRLPFGSS QKQHVMAPAA PQWDSARNSM DGRVVVNYLR SFGPGRSDSS  120
TCSVEGQVRG IRRSLDGHLL SSMVNRDEVP DREEEFGTES QGLSSLILGQ GVHSSAQLFG  180
CGLVVQSAAT KGQQQVHRAP HFRNLFPEQS SSFSSVLTQE SLPSDVNEHI HPQKKPRRYD  240
FVEPLSQAEI DTIRLNEESH YRNSYPPRGA PLADFIDAHH SYKIPAASFS TSLPDRPTFT  300
SNIPLQNLSL SNYQVSSPSV PLKSSSNDTS SARTPLVDYS YSSVDTKLQN GMRSVARGGP  360
LLSGGGGFKP LNLMDGPTQA AVSRDYLQSG SMGQVCSIRP TSMETGSRAA WPAGFINFPP  420
PTLESSGCVI PGMSSRRSLL DLDHHHHHHH HHHHEMAAEE REHVLNLQVQ RVHPISESQL  480
RLVIQKQLTT TDVGSLGRII LPKKEAETHL PHLPDKEGIE MCLYDHDVDR TWIMKYRFWP  540
NNKSRMYLLE NTGEFAKYHG LQQGDLLLIY RQLPARYVLR VKKMAPPLRL VTPPQSISES  600
GGAEDLVSGA AETVSSRALT SSASSRTLNS SSAASKEGLC IITSARPHLH TMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-314805851107B3 domain-containing transcription factor FUS3
6j9b_D5e-314805851107B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VYR50.0A0A2R6VYR5_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-35B3 family protein