PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0165s0013.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 474aa    MW: 50915 Da    PI: 7.5353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0165s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.2e-073354426
                         ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                           Cr++++ G C +G+ C+  H+
  Mapoly0165s0013.1.p 33 QVCRYWQE-GRCIRGEDCQWVHP 54
                         67******.**********9998 PP
2zf-CCCH24.25.7e-08140160425
                          ---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                          + C+f+++ G C++Gd C++ H
  Mapoly0165s0013.1.p 140 KVCSFWLK-GNCQRGDECNYLH 160
                          57******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6952956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00342955IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-63254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-43353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263136163IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6136162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-6139161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5140161IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-6140160IPR000571Zinc finger, CCCH-type
SMARTSM003201.7E-5167206IPR001680WD40 repeat
SuperFamilySSF509784.3E-49168468IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.8E-45169467IPR015943WD40/YVTN repeat-like-containing domain
CDDcd002005.44E-39170466No hitNo description
PfamPF004003.0E-4170206IPR001680WD40 repeat
PROSITE profilePS5008213.316174215IPR001680WD40 repeat
PROSITE profilePS5029422.438174376IPR017986WD40-repeat-containing domain
PROSITE patternPS006780193207IPR019775WD40 repeat, conserved site
PRINTSPR003203.3E-6193207IPR020472G-protein beta WD-40 repeat
SMARTSM003201246283IPR001680WD40 repeat
SMARTSM003202.2E-4290327IPR001680WD40 repeat
PfamPF004000.051295327IPR001680WD40 repeat
PROSITE profilePS5008212.881297336IPR001680WD40 repeat
PROSITE patternPS006780314328IPR019775WD40 repeat, conserved site
PRINTSPR003203.3E-6314328IPR020472G-protein beta WD-40 repeat
SMARTSM003201.4E-5330367IPR001680WD40 repeat
PfamPF004005.1E-4331366IPR001680WD40 repeat
PROSITE profilePS500828.57337366IPR001680WD40 repeat
PRINTSPR003203.3E-6354368IPR020472G-protein beta WD-40 repeat
SMARTSM00320200392426IPR001680WD40 repeat
SMARTSM003203.4429466IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAGMEVDDGP TKVGGKRGFS RSGITGRGWV GQQVCRYWQE GRCIRGEDCQ WVHPDGAGPT  60
GRPHASNGLA NKRPSNVIDN RVDNRLDNRG GFSDGASGGF SSGSGARRNP PSAKWGRPHS  120
KNNRAGGRTA PDVGRRPRDK VCSFWLKGNC QRGDECNYLH AHTANSDINL IKQLDGHGKT  180
VRAIELPHGS SHLYSGGLDQ TLRVWDCNTG ECTNVVPMGG DVGALLSAAT WLFVGLPNEV  240
KIWDMQTQAQ QSLSGPQGMV HSLAVSADML FAGIQDGSVL AWKFSTITNA FEPAASLLGH  300
NGAVITLMIH GSQLFSGSID KSIKVWDLGT GQCVQTLQGH THVVMRLLVW DKFLLSCSLD  360
GTVRVWGPNS EGFFESRYTH PEDNDVEVNP RSVELAGALT MCGTMDSSGK PVLICSYNDN  420
TVHFYDLPTF SERGTIQTRD EVRAMQVGPG GLVFSGEGSG GVKVWRFADA ATS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A9e-241714658322Tako8
6g6n_A9e-241714658322Tako8
6g6n_B9e-241714658322Tako8
6g6n_C9e-241714658322Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391880.11e-178zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A2R6W3F80.0A0A2R6W3F8_MARPO; Uncharacterized protein
STRINGPP1S374_36V6.11e-177(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-121C3H family protein