PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Mapoly0159s0029.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 617aa MW: 67431.1 Da PI: 8.5119 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.1 | 1.5e-23 | 82 | 147 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ +++ + ++l+e+a++L v +rRRiYDi+NVLe+++++ +k+kn+++w+g Mapoly0159s0029.1.p 82 RKDKSLGLLCENFLNLYGNENGECISLDEAATRL---GV--ERRRIYDIVNVLEGMEILVRKAKNRYTWHG 147 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 74.3 | 1.3e-23 | 256 | 336 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+ll+qkf++l+ s+++iv+l+++ak L+ + + k+k+RR+YDi+N+L++l+liek ++k++++w g Mapoly0159s0029.1.p 256 RREKSLGLLSQKFVQLFLVSQTQIVSLEDAAKILLGDsteacKLKTKVRRLYDIANILSSLQLIEKthmteNRKPAFKWLG 336 689***************************************99**********************9999999******87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-27 | 78 | 148 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.36E-16 | 81 | 146 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.2E-30 | 82 | 147 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.0E-20 | 83 | 147 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.4E-25 | 252 | 337 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.0E-32 | 256 | 336 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.0E-19 | 258 | 336 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.81E-12 | 258 | 337 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 617 aa Download sequence Send to blast |
MRVEAPVPLM HPAKVRYADC LENSSSSTEV SGCKGRPFGS KQIQPPRSRC ETSEELSHPS 60 IPEMENRGPS DGEARMQASY NRKDKSLGLL CENFLNLYGN ENGECISLDE AATRLGVERR 120 RIYDIVNVLE GMEILVRKAK NRYTWHGFAR LPQALQAMKE AALREYGLDG FRGTAAATEE 180 KDEAGSSGDE NNCVKTKGLS SCKAGKSSND SYKSSPSSPF SEAGDSQCEP EGNHNEAVSS 240 LPDQRHKVTK EKADCRREKS LGLLSQKFVQ LFLVSQTQIV SLEDAAKILL GDSTEACKLK 300 TKVRRLYDIA NILSSLQLIE KTHMTENRKP AFKWLGASSE GQFCTKRVFS NRLTSSNSSA 360 PKERRGLKRS SSKGGESAYA QQSAPKRPNA KPLQVLPVNV PIRERINKPV PVYPTMPPEM 420 FARRESLIPA ALSSGLPKGV TLGPVGGWRE WNDGAANNSP AKEVSKQPDP VSTAQTSGHC 480 SPSTSAANLV PPPFPGCPCA HGGSVDRNFL PVLPAHSGMC FPSFWPFQAM RQLVAGFQFP 540 PCDPSQLSDQ GTADCSLRME GMFTAAAMQY QNEALGQLFN HYVETWRSWY QQAVSMSPGP 600 FFEPPTKSCD SMKSSS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 1e-45 | 82 | 328 | 4 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358850.1 | 1e-132 | transcription factor E2F7-like isoform X1 | ||||
TrEMBL | A0A176W1Z0 | 0.0 | A0A176W1Z0_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W426 | 0.0 | A0A2R6W426_MARPO; Uncharacterized protein | ||||
STRING | PP1S132_65V6.1 | 1e-131 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2474 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01330.1 | 2e-58 | DP-E2F-like protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Mapoly0159s0029.1.p |