PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0158s0003.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB_related
Protein Properties Length: 353aa    MW: 42142.5 Da    PI: 6.959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0158s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07138180146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+W++eE ++l ++  ++G++ Wkt a++    R++   k++w+ 
  Mapoly0158s0003.1.p 138 RGKWSQEELQQLRELRLKYGNN-WKTAAQYSE--RSGQLMKDKWRH 180
                          89******************99.***888876..999988999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.99659121IPR017877Myb-like domain
SMARTSM007175.463135IPR001005SANT/Myb domain
PROSITE profilePS5129410.52133186IPR017930Myb domain
SuperFamilySSF466897.48E-7135181IPR009057Homeodomain-like
SMARTSM007170.0048137184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-7137180IPR009057Homeodomain-like
PfamPF139213.0E-8141198No hitNo description
Gene3DG3DSA:1.10.10.601.3E-4181251IPR009057Homeodomain-like
PROSITE profilePS500906.632186250IPR017877Myb-like domain
SMARTSM007170.45186252IPR001005SANT/Myb domain
SuperFamilySSF466895.79E-6237310IPR009057Homeodomain-like
PROSITE profilePS500907.201252305IPR017877Myb-like domain
SMARTSM0071739256307IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVSEEDEEGN EEKLSLARVE SGSEEDERRE KNILFDDEYM KQFPASLFQN RGWKRDQKRT  60
DLKNGFFSEE EDERIKRACF AWLRMKNLDE KDGVKMLFST MKHPEVRGAW LDIARCLPDR  120
SVKLIYTRGE RLLAGHKRGK WSQEELQQLR ELRLKYGNNW KTAAQYSERS GQLMKDKWRH  180
MRIETKRGRW TESEYNLLSA YVRWSLRIKD HVGRKENDRR IIRDDINWEI ISEKLLRTSA  240
SCAHEWYHRL ASPLITEGRW ANGDDRRLLQ SLMEHGASSE EAVDWDRLLD DRDGITCETR  300
WNEMKRLLWS RYVPFEDKLE QSLRRFAPDL IGQKDEVDIN FEVINGHVKL VE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176W2860.0A0A176W286_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-44MYB_related family protein