PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0156s0007.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ARR-B
Protein Properties Length: 586aa    MW: 63888.8 Da    PI: 6.5832
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0156s0007.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.72.3e-27288342156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++WtpeLH+rFv+aveqL G ekA+P++ilelm+v++Lt+++++SHLQkYR++
  Mapoly0156s0007.2.p 288 KMKVDWTPELHRRFVQAVEQL-GVEKAIPSRILELMGVQCLTRHNIASHLQKYRSH 342
                          5689*****************.********************************86 PP
2Response_reg35.94e-13201231109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vd++ +v++ ++  le  +y +v ++++ge+ale l++++  +++ l+  +    +G+++l+     + +lp i+++ +++++ + +
  Mapoly0156s0007.2.p  20 VLVVDEDTKVLNEIKCKLEGCQY-VVSAFTKGEDALEALRDQQniFHVALVEAMT--GEGFKILE----VARHLPTILMSNTENMAIMMQ 102
                          89*********************.***************999999*****99443..34555443....3347999************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           + +Ga dfl Kp + e+l++
  Mapoly0156s0007.2.p 103 GIALGAADFLQKPLSDEKLRN 123
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-1716132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.8E-1917135No hitNo description
SMARTSM004484.3E-718125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.8819129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-920124IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.53E-1021133No hitNo description
PROSITE profilePS5129415.889285344IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-26286344IPR009057Homeodomain-like
SuperFamilySSF466898.06E-18287344IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-25288342IPR006447Myb domain, plants
PfamPF002495.0E-7291340IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MFAFKEKFPD WKDFPNGLRV LVVDEDTKVL NEIKCKLEGC QYVVSAFTKG EDALEALRDQ  60
QNIFHVALVE AMTGEGFKIL EVARHLPTIL MSNTENMAIM MQGIALGAAD FLQKPLSDEK  120
LRNIWQHVVR KALNTGDPLL MESLVPVKAA VESVFSLSPS PGRVKAEPVS SPGSDGESKS  180
KDMEWVAGVT KSPSSGDAAV CERLPAPSTP QLEQTGRMNS QEDSVSESPG SDSFVQVKTE  240
EVAKAGAEGL ERTPSMNCLS VDSGDCSSGE KKGEGCKVNN KATSGRRKMK VDWTPELHRR  300
FVQAVEQLGV EKAIPSRILE LMGVQCLTRH NIASHLQKYR SHRRHLLARE AEAATWHHRK  360
PIDPNVWARS RRDGTAWLAP HHTNPPPIQP RPPMGLTPIQ PHPGAHCHPM GPPMHVWGHP  420
TMDHTAAHMW QQPQMATPTT WQAPDGSYWQ HPCIDAWGHP TPGPGTPCYP QPYRVPMAPM  480
PAFASPMTTA ALAADSYFAD ESMPIPMYPT APDDPELTVA AGAAASSKPS DFHPPKEILD  540
AAISEALANP WTPLPLGLKP PSMEGVMAEL QRQGINTVPP PPLTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15284340157ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379514.11e-116transcription activator GLK1-like
TrEMBLA0A2R6W4B50.0A0A2R6W4B5_MARPO; Uncharacterized protein
STRINGPP1S311_30V6.11e-116(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.63e-64ARR-B family protein