PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0131s0021.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 817aa    MW: 88918 Da    PI: 5.0192
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0131s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07526547426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          +lC +f++ G C  G++C+F+H+
  Mapoly0131s0021.1.p 526 VLCTHFMK-GRCAKGENCTFSHD 547
                          79******.*************5 PP
2zf-CCCH18.43.9e-06581603527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +C+ff+  G C  Gd+C F+Hgp
  Mapoly0131s0021.1.p 581 PCKFFHTRGLCYDGDSCLFSHGP 603
                          8********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.065522549IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4522548IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6524547IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-5526547IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4527547IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535551578IPR000571Zinc finger, CCCH-type
SMARTSM003560.0074551577IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-5553576IPR000571Zinc finger, CCCH-type
PfamPF146080.66556575No hitNo description
SMARTSM003560.087578603IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-13580624IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389581604IPR000571Zinc finger, CCCH-type
PfamPF146080.1581602No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MASESSNRSE QLWIPLPTLP RISVVSSSRA RLAHRRPISI SLPVKAPSSS PQLGGESSDV  60
LNPSQQQFPF ARPAEVSQVV PLIASLPASV SISENRLGSV DSARGFLKNC ERSDPLAAFS  120
AGGSPLENTE DTSVSSVLDD NTGNDCLDGN TGLVPSSETG SAKLCDVSSI KSQEEPSEGL  180
SSSCAFVVDS VIQKQQGTSV QELLLIESNA LIDCGEAGNF IQCYDPLLPC ADQAARCEDI  240
ASSVQNSTLD VEVAELNNKI GLNSEESEPE EGQLPGEWSG SDDSVEHRSP NCDVNENYST  300
ISLAGEEDFA APLVAVCTQT QFRSEENSSL PGSLNSGYTA LPSRMTETAK KKKKKKHKKG  360
EGSKKRAREK SSQKYKELKS KKLKSIAGEH LGKSLVERLG QSENPDLQNV KRDSAETENQ  420
ESKNQKSSSS RDVLEEGEIS EPTQISNGIL FSLVEDEVGL WTTDDIDDQL VAQMEEDGAV  480
KKKRGPETAE RMLKRKIAKR KKRAQKEREL GIRRPPRNYV SKPVKVLCTH FMKGRCAKGE  540
NCTFSHDGVP LTKQEPCKFL MSHSCLKGDD CPYSHDLKAF PCKFFHTRGL CYDGDSCLFS  600
HGPISEEARE KILKRVEKEK KERASNGCGL EIPTPLFSSP LPAEDDPDPL GWGTSNSCPS  660
FDVDLPQGRP GIIELSRDYI GEAGCGDLVE NSHHAYSNLE TSSYPGVNFA QDISLYDSHL  720
PGKDNRDEKL DYVGEKCSSS QQTTFSTATL DAAETDLTSS REVSALNTAG PLFPFQRGCV  780
FENGVLEHKK SVPSLTQTTE SRKLTIENLL GEVLRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cqe_A6e-145536161273KIAA1064 protein
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349355KKKKKKK
2349358KKKKKKKHKK
3350358KKKKKKHKK
4351365KKKKKHKKGEGSKKR
5481502KKRGPETAERMLKRKIAKRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6W8480.0A0A2R6W848_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81611212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-06C3H family protein