PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0121s0050.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

C3H

Protein Properties

Length: 396aa MW: 42907.1 Da PI: 4.7617

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0121s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.5	1.1e-08	85	109	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt++C+ ++ C+yGdrC+F H+ Mapoly0121s0050.1.p 85 KTRPCKKYFSELGCPYGDRCNFLHD 109 8***********************7 PP
2	zf-CCCH	43.6	4.8e-14	156	181	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ + tG C++Gd+C+FaHg Mapoly0121s0050.1.p 156 WKTRLCNKWETTGNCPFGDKCHFAHG 181 8************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.2E-10	81	111	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.249	83	111	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.32E-7	83	111	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0097	85	110	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.9E-6	85	109	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-18	151	186	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-10	153	186	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.1E-9	155	182	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.061	155	183	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.8E-11	156	181	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MVWKSFVNHL LAGKMWLLPK RAEEEGLLPP LQLLSRLSRV RMEGMENERA VLEQEEEEEE 60 EEEEEGGGNA VGDGVNISDM QRFHKTRPCK KYFSELGCPY GDRCNFLHDE QTPQPKVPRE 120 SVVITVASSA GASGSGGGGG VGGVAGGTAN LRPPNWKTRL CNKWETTGNC PFGDKCHFAH 180 GTAELQKYGG GPFDPTAEMG SGVQVDSKFV LNQSSNFLDG DDVFFSSFGD GYGQVMNVRQ 240 STAASIQQNS RLNQGPGVGY KSLGGWKGPT DRISTIYGDW VEDEEWEQSP VHVIKSAQQQ 300 VQPNQAYQEA ADYPQSEIGP TRDRGGLSTS YGMYSNGQEV TGQKSSLNQG NGFTSSSRVT 360 RLHAQGLQGA DMAYAAQERG SDNHYNGTQG WGGEL*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MVWKSFVNHL LAGKMWLLPK RAEEEGLLPP LQLLSRLSRV RMEGMENERA VLEQEEEEEE  60
EEEEEGGGNA VGDGVNISDM QRFHKTRPCK KYFSELGCPY GDRCNFLHDE QTPQPKVPRE  120
SVVITVASSA GASGSGGGGG VGGVAGGTAN LRPPNWKTRL CNKWETTGNC PFGDKCHFAH  180
GTAELQKYGG GPFDPTAEMG SGVQVDSKFV LNQSSNFLDG DDVFFSSFGD GYGQVMNVRQ  240
STAASIQQNS RLNQGPGVGY KSLGGWKGPT DRISTIYGDW VEDEEWEQSP VHVIKSAQQQ  300
VQPNQAYQEA ADYPQSEIGP TRDRGGLSTS YGMYSNGQEV TGQKSSLNQG NGFTSSSRVT  360
RLHAQGLQGA DMAYAAQERG SDNHYNGTQG WGGEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6WA38	0.0	A0A2R6WA38_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2045	17	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35430.1	3e-26	C3H family protein

Link Out ? help Back to Top
Phytozome	Mapoly0121s0050.1.p