PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0114s0007.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB_related
Protein Properties Length: 714aa    MW: 80161.1 Da    PI: 8.0512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0114s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.8e-09503543239
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                          ++W+++E ell +av+++++g   +W+ +a+++g+gR+  +
  Mapoly0114s0007.1.p 503 KPWSKQEVELLRKAVAKYPKGtsqRWEVVANYIGTGRSVDE 543
                          69**********************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.18E-2088173IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.2E-2192196IPR001623DnaJ domain
SMARTSM002718.7E-1694169IPR001623DnaJ domain
PfamPF002261.6E-1795174IPR001623DnaJ domain
CDDcd062571.50E-1395166IPR001623DnaJ domain
PROSITE profilePS5007618.88295177IPR001623DnaJ domain
PRINTSPR006252.9E-8100118IPR001623DnaJ domain
PRINTSPR006252.9E-8118133IPR001623DnaJ domain
PRINTSPR006252.9E-8149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.603.1E-6499544IPR009057Homeodomain-like
PROSITE profilePS512936.453500555IPR017884SANT domain
SMARTSM007174.2E-7501554IPR001005SANT/Myb domain
SuperFamilySSF466895.98E-8503546IPR009057Homeodomain-like
PfamPF002491.2E-7503544IPR001005SANT/Myb domain
CDDcd001677.37E-5504544No hitNo description
PROSITE profilePS512939.211652707IPR017884SANT domain
SMARTSM007173.8E-6653705IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-4654702IPR009057Homeodomain-like
SuperFamilySSF466898.97E-9655702IPR009057Homeodomain-like
CDDcd001671.27E-4657699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MPALKHRLFL TYNSAELVDG APLYVCSNGS PFQLKKEPAG HSFNEAAKRL LGCLNKVEED  60
DTSASDKKEK GSSPSVDSYH FKGKKKGKDD GDQQDHYALL GLSHLRFLAT EEQIRKSYRE  120
VALKHHPDKQ AALILQEETE EAKQAKKEET DRHFKAIQEA YEVLIDPAKR RVYDSIDEFD  180
DEVPSECSPE DFFKVFGPVF ARNGRWSVAQ PVPSLGEDES TMADVDRFYD FWWSFKSWRE  240
FPHADEFDLE QAESREHKRW MERQNTKLRE KAKKEENGRI RTLIENAYKR DPRIVRRKEE  300
EKAEKLRKKQ AKVLAKQEKE LEAARLLEEE KLKKEVEDKR IAEEAAAQKK IREKEKKLLR  360
KERSRLRSAA AGVTSRKDFR VSDDSVETLC MSLEMVQLRC ICEKLEEKKA VEEQAEMLKD  420
IIKRVDDGTF TIEPSYSGSP PQRATTVESA TASTPSSVTE DQPKVSPVKA DTGLPNGHVS  480
STEPGEEVKK SVSALNGVEK KEKPWSKQEV ELLRKAVAKY PKGTSQRWEV VANYIGTGRS  540
VDEILKAIKT VLLQKPDSSK AFDSFLQKRK TADVSIASPL STREDIGDTG VNPNASTPVI  600
ANGTGNKEKV EGLANGVAAP EESSSEKKGP ADTQPSSNGN ASSAPNGTPG AAEQELWSET  660
QELALVKALK TFPKDTAQRW ERIAAAVPGK NKSQCFKKFA ELRENFRSKK GTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A6e-2018429413123Zuotin
5dje_B6e-2018429413123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390803.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024390804.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024390805.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024390807.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2R6WBF20.0A0A2R6WBF2_MARPO; Uncharacterized protein
STRINGPP1S128_8V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-105DnaJ domain ;Myb-like DNA-binding domain