PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0104s0012.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 687aa    MW: 73305.6 Da    PI: 7.3635
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0104s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08238258526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G C++Gd C FaHg
  Mapoly0104s0012.1.p 238 ACPDFRK-GSCRRGDACEFAHG 258
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-6233259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807234260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5238260IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-7238258IPR000571Zinc finger, CCCH-type
SMARTSM0035611268291IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037268292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MPGVLLDEQN YPLDSMQPSS FYESLAAFSP PVSHSQAELM RNNSFSGSRD SSSSLSHSAP  60
IFSRSHSAIS SSALQGFSNY FSPPTTPKKS DNGFSGAASD LGEDMSALMG DNGDVLAGLN  120
GASASSPLSM STGSHHREYQ ADLRTFFGGN SSNLSSPTVQ AGNGSLDKYI SSNGNDEDDN  180
WGSTVVDVYA CDQFRMFEFK VRRCMRGRSH DWTECPFAHP GEKARRRDPR RFHYSGTACP  240
DFRKGSCRRG DACEFAHGVF ECWLHPARYR TQPCKDGRNC RRRVCFFAHT PDQLRLLPAA  300
AQAASAAARN GGNFSLATQL PQLSGSYDGS PVRNGVSFDG AYGYDANPAG CVSHCPPSPH  360
GSCQNGSLHG GCGHFDGAIG GNASAHNGHC CASPHMSSPT STLVGHSPSP PPLSPPLSPS  420
GSPPMSPQSP HHWPNSPGAQ SLSCTSSQST LHAQQAACLQ ASIQAYPYSQ GPSSPLSRGT  480
NSQQAMSAAA AAAAHAHQTQ SLTPPAHRRH LDRLNSMPTL SIPQVDHSHS RMLQNVSSPL  540
SSPSSCSPPS PGVQPNSSSL SDLLTTIQHL NLRGSAIPLW VQPQQGQGGA QSANQYSSGP  600
SPLRRCSQSV PCTPTKLRWE DRVPRWEVDD NEEAEPPAQR VESGLALRAK IYGRLGKENR  660
MDSEDAPDLG WVNELVKDER PSGQQW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376584.11e-143zinc finger CCCH domain-containing protein 30-like
TrEMBLA0A2R6WDQ10.0A0A2R6WDQ1_MARPO; Uncharacterized protein
STRINGPP1S297_45V6.11e-143(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-72C3H family protein