PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0095s0037.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 410aa    MW: 46512.9 Da    PI: 6.0664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0095s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003281103323
                          ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                          C+   Cgk F+  s L++H  +H
  Mapoly0095s0037.1.p  81 CTfeGCGKIFPEASGLRKHAHVH 103
                          88889**************9887 PP
2zf-C2H218.46e-06108132123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + C+   Cgk+F ++s LkrH   H
  Mapoly0095s0037.1.p 108 FICHyeGCGKRFVDSSKLKRHFLIH 132
                          78*******************8877 PP
3zf-C2H221.94.5e-07138162123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + Cp   Cgk Fs   nL++H+rtH
  Mapoly0095s0037.1.p 138 FICPfeGCGKAFSLDFNLRSHMRTH 162
                          78**********************9 PP
4zf-C2H2171.6e-05168193123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          + Cp   Cgk++ + + Lk H+rt H
  Mapoly0095s0037.1.p 168 HICPfeECGKRYAHEYKLKAHLRTyH 193
                          689*********************99 PP
5zf-C2H211.20.0011235259223
                          EET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                           Cp   C+k++ + + L+ H+++ H
  Mapoly0095s0037.1.p 235 GCPfeGCSKRYIHEYKLNLHLKSaH 259
                          59999*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-1076105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01279103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.05379108IPR007087Zinc finger, C2H2
SuperFamilySSF576673.17E-880132No hitNo description
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-14106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017108132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.775108137IPR007087Zinc finger, C2H2
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576676.39E-16119171No hitNo description
Gene3DG3DSA:3.30.160.605.0E-22129159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.0E-4138162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.046138167IPR007087Zinc finger, C2H2
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-14160192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.17E-6162195No hitNo description
SMARTSM003550.088168193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949168198IPR007087Zinc finger, C2H2
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-7229256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11234259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280236259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEVAETAVYP SDGMLVSTEQ GKSTGRRWQK HWVPQDTVLG SGKCSLLKWV TEDVLNLLST  60
RGEPVEEEQE PADEHETVYL CTFEGCGKIF PEASGLRKHA HVHGEKQFIC HYEGCGKRFV  120
DSSKLKRHFL IHTGEKHFIC PFEGCGKAFS LDFNLRSHMR THTGENYHIC PFEECGKRYA  180
HEYKLKAHLR TYHDKNIPET NVVSPHTDPE REIFVPTKFV PPPVITPSSI EKPFGCPFEG  240
CSKRYIHEYK LNLHLKSAHM VHDIYEDGSR PGRGSDGEDD VEEVSDQDMR EYEEPVQRYY  300
EPTPPKVGQP SSKKRGSRAP LKGKLRIIEK PPAKSAKRKR PAVPTTMKLN VKPPSAGRNV  360
VARQEIAEDS EETEDENENT EEEDNGHQMG GRGRGRGEDD DEETEDDMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-36811928117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026388132.11e-109zinc finger transcription factor YY1-like isoform X2
RefseqXP_026401093.11e-109zinc finger transcription factor YY1-like isoform X2
TrEMBLA0A2R6WFZ90.0A0A2R6WFZ9_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-90C2H2 family protein