PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0091s0012.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB_related
Protein Properties Length: 894aa    MW: 103355 Da    PI: 8.9789
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0091s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.3e-13407449247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          grW +eE e+l+++v+++G++ W+tIa ++g  R+   c  +w++ 
  Mapoly0091s0012.1.p 407 GRWDAEETERLKRLVQKHGNN-WTTIACHLG--RSNGACARKWRSI 449
                          9******************99.********8..**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071731327403IPR001005SANT/Myb domain
PROSITE profilePS500905.482344401IPR017877Myb-like domain
PROSITE profilePS5129414.875401454IPR017930Myb domain
SuperFamilySSF466891.44E-9405449IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-12405449IPR009057Homeodomain-like
SMARTSM007171.2E-9405452IPR001005SANT/Myb domain
CDDcd001677.31E-6408449No hitNo description
PfamPF139216.3E-13409469No hitNo description
SMARTSM007170.28458524IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-4458524IPR009057Homeodomain-like
PROSITE profilePS500906.121458522IPR017877Myb-like domain
SuperFamilySSF466899.79E-5508588IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-4535587IPR009057Homeodomain-like
SMARTSM0071732535586IPR001005SANT/Myb domain
PROSITE profilePS500905.657539584IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MKSSLVVDCR THPGDWKFKR SKLLVQSVCF QDVLYNSYSK LFDSWNGLHE DIAGVASPAD  60
VSQRHSSPMG RKRNSRDDSG ENGHADQETP VEEVERQYCE FSKYSTSLPD LQAGKSRRSK  120
SSRKSLTWKE EAKKRSTECL NYNPSTPEAK MKKPLVLDFN HSEERGPDTR NTPIGEVNKK  180
SSFSSKFPVR TSTLEMGTRK SRNYSGVPGP EYASSLPREI NRGIRDSEVS MCTPEERSLS  240
TPSTGLDHEA TLIHKTKRRM TEESEPPLFT PLSQIRGRDA HCIPLTVKLA KSQKKLFCGP  300
DDKAKRCKDD DEEERGWASD RRRKDLDHGK FTEDEIISLN CGLNQLMEAR NWTREEAAKI  360
LTHQSGRGNP HAEARGAWKE IAKFLPSSSI VRVNMKVREL LFKGKTGRWD AEETERLKRL  420
VQKHGNNWTT IACHLGRSNG ACARKWRSIR TDECTFRKRG KWTQDEYDEL CRHVRDAKAT  480
KIFKSTKRIG KRKVRDDLCW EPIALRMCRP ANQCSAVWYE RLAPSMHKEL CLDEKDRQWS  540
DEDDRRLLTR MLRLMSPHGS ICWRKVYLKN RKTATCKARF NQMTHPKCLG EKHEATLHEK  600
LEILVRRYAP DLTVQNPIGG LDESRIHLVE EMIKRHDSES DFDITESRRE EYEWTMNTFG  660
SDDRRSTYKS RAAHSQGCGD QQEDNILPLR MEKEVDCRVR GTPGFETKRS KDQRKIERES  720
TPSGYKFEEN DNLSANDSMG RESEWGWSSP RRKEEDEYSV HCAECDLDPV SQHRPRVQER  780
KTVSRYIVYN SNQRNLDLVR ETREDSSVKD VRVSRKCCTR PSSETSYSLE CQNCDRKNGG  840
NFFYNLTKHD RSKNKTTFYR VEQGNQCTSV GLKDGKTVRE SSYTDDESTS LDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WH330.0A0A2R6WH33_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.18e-19MYB_related family protein