PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0086s0035.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family B3
Protein Properties Length: 794aa    MW: 85603.9 Da    PI: 5.3482
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0086s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.8e-13570666295
                          EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          +k l+psdv+++gr+vlpkk ae+h    g    e++    ed  +g + ++++++  ++ks++y+l+ ++ eFvk ++L+egD ++++ 
  Mapoly0086s0035.1.p 570 QKMLKPSDVGNLGRIVLPKKDAESHlpwlGAR--EGIPFPCEDfDTGDKLNLRYRFwpNNKSRMYLLE-NTGEFVKKHNLEEGDRLMIY- 655
                          6899***********************87655..5666999998899*******99777777777777.****************9999. PP

                          -SS.SEE..EEE CS
                   B3  85 dgr.sefelvvk 95 
                           ++ ++ ++ ++
  Mapoly0086s0035.1.p 656 -KNvQDDTFIIR 666
                          .44455544555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-23560672IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17568656IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-19568669No hitNo description
SMARTSM010191.5E-6569669IPR003340B3 DNA binding domain
PfamPF023625.6E-10570667IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MEGHAPVDHV QNRAVNSWFS QRPRTHSDHR GVKREMADVS QYVGSWVDDP KERQRISPEA  60
EAGGWLRDEP VDGHNSSQRS GSSAAFPCGN PASLGSVDVD GNTMYSGTKN SNFNVSQVST  120
SSPSDALPSG SPGRLPDLTE DAAGPPNQSC TPVYFQEQRA NLFAQLRGIR IKESVIRSAI  180
ERLGGGQKGL RAVIKVIIFW LRSRTTSSQT SEQFSIQEPL APLSTEEIEK LPWNHGGSLE  240
NSFGTSQENG SGCTVSGDLQ FLMNSSFLDG APGSVSCTGE LKLGDGEYAE TKNHDIQLLA  300
INEPGALSGM LDDMGVQELG VQGSGSLLDV QPSLVAGWSH QTFITDERQH RLGIRRLSPS  360
PERVTLSTDL GYEDTQFHRN KIRRLSPSGS SSTSSCDVPA YSSISQSLPD VMGFSNNPFA  420
PGGPFSISPS SPSLDHHAMD MGTFSSFGMQ GTSLIDEATI GGTAAMYTDS TMEREQSGAR  480
LGLVGKSKTT PAAHTRLARK NRMDRNRRSA SLHPTRSTQS GAPGVGVTGS GWAPSSGALR  540
TPHSQTLPGG EGQTRVKDRR DMDRLQYLLQ KMLKPSDVGN LGRIVLPKKD AESHLPWLGA  600
REGIPFPCED FDTGDKLNLR YRFWPNNKSR MYLLENTGEF VKKHNLEEGD RLMIYKNVQD  660
DTFIIRGRKA QDCVDPTSSQ AQADDKEVRG KEISSQGPPL SGSSSGTSSV DMDVVPDAPL  720
EHTVSGQEGS PASGVTAVTL ITSQDDLLNF ADLPDAPMGD GTEPLVRFPS LEAFEDLLGM  780
VPAVLSQQQQ ETL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-335656721108B3 domain-containing transcription factor FUS3
6j9b_D6e-335656721108B3 domain-containing transcription factor FUS3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WIL50.0A0A2R6WIL5_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-37B3 family protein