PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0070s0095.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C2H2 | ||||||||
Protein Properties | Length: 398aa MW: 42120 Da PI: 8.3446 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 35 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ +++H H Mapoly0070s0095.2.p 35 FKCHVCHKKLSTAGGMVVHVLQvH 58 89*****************87655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50808 | 11.285 | 6 | 65 | IPR003656 | Zinc finger, BED-type |
SMART | SM00355 | 15 | 11 | 34 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 13 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.046 | 35 | 58 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 37 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MGKKKKKSFK VWCFYCEREF EDEKILIQHQ KAKHFKCHVC HKKLSTAGGM VVHVLQVHKE 60 SITKVPNAKP ERESTEPEIF GMEGIPPEIL AAHDGDQGGL DDDEKPAKVA RVEIPPSSPF 120 GGLVMGPIAL GMASQPMYSP MPPVYMSQQP SGPRPPSWPP QPPNSHGWNH MHPGQPPMHP 180 PRPPPPPQPL FPIQAPNPPS MSSASALPPA QPLFPIRPAA PPSSAPPSQP LFPVNGTPST 240 GSSSSSSSVG TSSSGVPLRS PGNGQTAVDS TSGAGSLPGG QSSVTSATMV GRPPSLPFGG 300 VPNLPPSGSH MYASAPSTGG PSIGPPPVIS NKPPGPPGLT NEVYLVWDDE ILSMEERRLS 360 LPQYQVLDET SQMNTIEAAF DRRILEGRLA GRMGFRV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914258.1 | 1e-131 | protein SUPPRESSOR OF FRI 4 isoform X2 | ||||
Swissprot | Q9C5G0 | 1e-106 | SUF4_ARATH; Protein SUPPRESSOR OF FRI 4 | ||||
TrEMBL | A0A2R6WP58 | 0.0 | A0A2R6WP58_MARPO; Uncharacterized protein | ||||
STRING | PP1S162_133V6.1 | 1e-118 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30970.1 | 3e-55 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0070s0095.2.p |
Publications ? help Back to Top | |||
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