PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0070s0028.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C3H | ||||||||
Protein Properties | Length: 422aa MW: 47982.9 Da PI: 7.5353 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.8 | 1.3e-11 | 358 | 383 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+++ + G C+y ++C+FaHg Mapoly0070s0028.1.p 358 FKTELCKNWEERGGCPYTANCRFAHG 383 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-16 | 355 | 390 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 357 | 385 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-9 | 357 | 389 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-7 | 357 | 384 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-9 | 358 | 383 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-6 | 391 | 420 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-8 | 391 | 420 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 40 | 395 | 421 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.859 | 395 | 421 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MNHVSKSNSP SMQTCVDSSL NSYLAVEVSN VAGEELKEFV GDIESVGKGK QEGLLLQPEF 60 LSQVPQDNAC EHVLFEEEKH ARKLQVEELY FDNTRDDLRQ RWQVLSQNQD LLWHKKRVFQ 120 LFGRVMMLLE EKLSCAKEVE KLSKTLSEEK CLDQSSLTSE TAAFRHDSSP SLRALNFDIM 180 HKRRSPSPTH GFSQEIRKGT FNLQLSDSSP GYISLTTSTS SGSPFLQSDR GGVARGPAFN 240 SVGEPYFPCE WGMPSKQISS KVATMSLPLS VQESRIKDPP YPIFFEREAS HSFRKFTSSE 300 GSQVPFDEFK GSSNSSSTQH SSPDYGFPIR PPSFYSEDYE NIKLRRASRK TISQQGQFKT 360 ELCKNWEERG GCPYTANCRF AHGIEELRPV VRHPLYRTQI CRMLVEGRDC IYGHRCHFRH 420 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1m9o_A | 3e-15 | 352 | 420 | 4 | 72 | Tristetraproline |
1rgo_A | 3e-15 | 357 | 420 | 3 | 66 | Butyrate response factor 2 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WNX7 | 0.0 | A0A2R6WNX7_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2058 | 16 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 6e-30 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0070s0028.1.p |