PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0068s0079.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C2H2 | ||||||||
Protein Properties | Length: 616aa MW: 68499.9 Da PI: 8.1152 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.1 | 7.6e-06 | 259 | 283 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs +s LkrH H Mapoly0068s0079.2.p 259 YVCHweGCTKRFSERSKLKRHFLIH 283 9********************8877 PP | |||||||
2 | zf-C2H2 | 18 | 8.1e-06 | 289 | 313 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C Cgk Fs nL++H++tH Mapoly0068s0079.2.p 289 FICVyeGCGKAFSLDFNLRSHMKTH 313 6788889*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.99E-6 | 227 | 266 | No hit | No description |
SMART | SM00355 | 2 | 230 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 230 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 230 | 255 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 232 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-14 | 257 | 281 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0011 | 259 | 283 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.96 | 259 | 288 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 261 | 283 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.8E-15 | 270 | 320 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.6E-21 | 282 | 316 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0055 | 289 | 313 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.277 | 289 | 318 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 291 | 313 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.4 | 318 | 343 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 318 | 341 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 320 | 343 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MSLAGLGGMP NYAKTEPVVS MDDEPKTVEK NLATCKVEDI SVLESKVGHS SFGNEIDRTV 60 EEKRTRICVE SRGERRLQVK VDEGAASGES GPRSTGGGRE RCRGCGVREE PRKNELCESC 120 KQEGSGNFEG KVTRSSTRRR LGVQPVTPRL EEPRAVRANR GMKRRFPGDE SDDNCDKRKR 180 TRVRSISKVC GPNAQQQSGS ETSGKGKEAI DKDWKPSVRG KRRGRQSEVF LCNVEGCEKS 240 FVDAVALYNH GRVHGDRPYV CHWEGCTKRF SERSKLKRHF LIHTGEKPFI CVYEGCGKAF 300 SLDFNLRSHM KTHTGEYHEC PHPGCEKRYC QEYKLRAHIC KEHKGAGKSS DNGGRLAKED 360 SVISSNDKAA KKKERAEQLE LRRAKLEKCK EGKRKRIQEL EAELEGEMKE LTKLDKALRK 420 VTREQEEEEF EGCVEQDLLS DNAGEAELGE VYGEEKEVVM FAHKLPTADQ GARLMNQVVL 480 IQGPTPPLSP SISSSQPFLM SRVSTLDSTS PTESGLHSHH STHLLPYSVT PICQLSMDSL 540 FGDRRNSQNL VSFVGSQGLS MSKDRLGDPH GGGVSQAFSA NCQSSISFIH GEQSSQCEPP 600 VSQLFTYQEQ PCLQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 4e-29 | 232 | 339 | 8 | 114 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 179 | KRRFPGDESDDNCDKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WPS6 | 0.0 | A0A2R6WPS6_MARPO; Uncharacterized protein | ||||
STRING | PP1S577_1V6.1 | 1e-89 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 2e-46 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0068s0079.2.p |