PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0067s0020.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 517aa    MW: 57665.9 Da    PI: 6.5238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0067s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06155177427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           +Crff++   C++G++C+ +Hg+
  Mapoly0067s0020.1.p 155 QICRFFLQ-QRCRFGGNCRQSHGM 177
                          68******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd045080.00346116147No hitNo description
PROSITE profilePS5010314.859151178IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5151177IPR000571Zinc finger, CCCH-type
SMARTSM004439.2E-11301347IPR000467G-patch domain
PROSITE profilePS5017411.724303349IPR000467G-patch domain
PfamPF015851.3E-11303341IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEQPVDMQLE QELEGHIQEQ RASVIAIDEA LESDPSNSDL LLVKEELLAC VKAAEESVFQ  60
LKRARLLQEL DAISPAEEPE KSRPPGIANP TTTQDLNSSS AEGVSQLVQL SSITEGTVCR  120
FRHTNGRWYN GKVCSVDKSG VARVFFLSPT NENMQICRFF LQQRCRFGGN CRQSHGMEIP  180
SHALRLFHRP DWERIPLGTR VFACDGDETT GLWKQAELEL WDDEFFKKAQ VVFIGDGKKA  240
LVDIGMLALS EHAELSDDGS SDSSSDGEEE EDEEEEQTEG IGILVPGGIQ TDTTTFANWE  300
KHTRGVASKM MASMGYRVGM GLGISGQGQI APIEARVLPP KQSLDFINEK RHKERDKEGT  360
KGHEGKKKTR GGKRSRYKKW AAAALAAKTD RDKAPDVFGI INQHLGPVRH DETSFGSGSQ  420
RFEPKESRGP IGQKKMQRKE DRRSIVAHED SIMEIRGKIT KLEEMALRNR KEKAVYDGVN  480
RKLEVARRAL SEAEAAHASA TNAVHSKEKE KKWLRF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WQ120.0A0A2R6WQ12_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP557055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.11e-106C3H family protein