PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0065s0047.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

Trihelix

Protein Properties

Length: 316aa MW: 35659.9 Da PI: 5.6572

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0065s0047.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.9	1.4e-14	48	133	2	81
trihelix 2 WtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt e L +arre+ +r ++g k + +W+++ ++++++g+ +s++qC++kwe l+ ++kk+++ ek+ s+++s + + Mapoly0065s0047.1.p 48 WTPAEMVILQAARREDFDRQNKGglkekkKTAVERWQWIEDYCWAQGVLKSAQQCQDKWELLASEFKKVNDYEKNIPSGQRSYWEM 133 ************999999976343333577899**************************************98888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.5E-12	46	133	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MTSEEVAMAD PRAIVQVNDD QSKEIDDDVL YGDPEGSRNG RTYKKSNWTP AEMVILQAAR 60 REDFDRQNKG GLKEKKKTAV ERWQWIEDYC WAQGVLKSAQ QCQDKWELLA SEFKKVNDYE 120 KNIPSGQRSY WEMLGDERKK HRLPRNFYKE VFQALTEWYN KSKAADPGEL AVDTSTPAPI 180 LRIACSYGSD AGAGGSPDNT AGSNGEFSDS EGDDAENANG PSTLRKRKLL PKSSDRMAPI 240 LERNNKKVVD AMMESEERKD KRHKEDMEME KVKLKFEKEK FRGTMELGSG YISALNNIGE 300 GLKQLSAALQ ASRQP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	228	LRKRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384743.1	1e-109	trihelix transcription factor ASR3-like
Refseq	XP_024384744.1	1e-109	trihelix transcription factor ASR3-like
Refseq	XP_024384745.1	1e-109	trihelix transcription factor ASR3-like
Refseq	XP_024384746.1	1e-109	trihelix transcription factor ASR3-like
Refseq	XP_024384747.1	1e-109	trihelix transcription factor ASR3-like
TrEMBL	A0A2R6WQU5	0.0	A0A2R6WQU5_MARPO; Uncharacterized protein
STRING	PP1S314_53V6.2	1e-108	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-21	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Mapoly0065s0047.1.p