PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Mapoly0063s0098.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 237aa MW: 25763.6 Da PI: 8.6608 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.6 | 7.3e-34 | 51 | 106 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++Y+eClkNhAas+Ggha+DGCgEfmps geegt +alkCaAC+CHRnFHRreve Mapoly0063s0098.2.p 51 IIKYRECLKNHAASIGGHAIDGCGEFMPS-GEEGTLDALKCAACECHRNFHRREVEG 106 579*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-24 | 44 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.9E-31 | 52 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-31 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.367 | 54 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-31 | 159 | 234 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.45E-18 | 161 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-27 | 173 | 229 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MDLGAHEGDL QMPMSGGYAG HHESSKMKLL TSGNGTGMED IRPLESKAKK IIKYRECLKN 60 HAASIGGHAI DGCGEFMPSG EEGTLDALKC AACECHRNFH RREVEGEPSC DCHHVRKERK 120 RGTPGAMPHT PLALPATTVI ARPPAPMIMA LNTVPTDSDD QDGGVGGPAS AMKKRFRTKF 180 SAEQKEKMCS FADKLGWKIQ KHDEAAVQAF CADIGVKRHV LKVWMHNNKH TLGKKI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-26 | 174 | 231 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368812.1 | 2e-91 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 1e-64 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2R6WRS7 | 1e-175 | A0A2R6WRS7_MARPO; Uncharacterized protein | ||||
STRING | PP1S165_109V6.1 | 8e-91 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-63 | homeobox protein 22 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Mapoly0063s0098.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|