PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0063s0098.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

ZF-HD

Protein Properties

Length: 237aa MW: 25763.6 Da PI: 8.6608

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0063s0098.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107.6	7.3e-34	51	106	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++Y+eClkNhAas+Ggha+DGCgEfmps geegt +alkCaAC+CHRnFHRreve Mapoly0063s0098.1.p 51 IIKYRECLKNHAASIGGHAIDGCGEFMPS-GEEGTLDALKCAACECHRNFHRREVEG 106 579***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-24	44	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.9E-31	52	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-31	53	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.367	54	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.5E-31	159	234	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.45E-18	161	234	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.1E-27	173	229	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDLGAHEGDL QMPMSGGYAG HHESSKMKLL TSGNGTGMED IRPLESKAKK IIKYRECLKN 60 HAASIGGHAI DGCGEFMPSG EEGTLDALKC AACECHRNFH RREVEGEPSC DCHHVRKERK 120 RGTPGAMPHT PLALPATTVI ARPPAPMIMA LNTVPTDSDD QDGGVGGPAS AMKKRFRTKF 180 SAEQKEKMCS FADKLGWKIQ KHDEAAVQAF CADIGVKRHV LKVWMHNNKH TLGKKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-26	174	231	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024368812.1	2e-91	zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	1e-64	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A2R6WRS7	1e-175	A0A2R6WRS7_MARPO; Uncharacterized protein
STRING	PP1S165_109V6.1	8e-91	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-63	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Mapoly0063s0098.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]