PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0058s0005.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 319aa    MW: 36079.9 Da    PI: 8.2842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0058s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-1677121348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WT eEd+ l  av+++  ++Wk Ia+ ++ +R++ qc +rwqk+l
  Mapoly0058s0005.1.p  77 TWTIEEDDALRAAVALHKARNWKQIAAALP-NRSDVQCLHRWQKVL 121
                          6*****************************.************986 PP
2Myb_DNA-binding58.31.7e-18127173148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEde+ +++v+++G ++W++Iar ++ gR +kqc++rw ++l
  Mapoly0058s0005.1.p 127 KGYWTKEEDERMIELVAMFGVKRWAAIARSLP-GRNGKQCRERWCNHL 173
                          689*****************************.*************96 PP
3Myb_DNA-binding44.63.4e-14179222146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r +WT+ Ed  l  a+k++G++ W+ I++ ++ gR+++ +k+rw++
  Mapoly0058s0005.1.p 179 REPWTEAEDMMLFLAHKRFGNK-WAEISKLLP-GRSDNGIKNRWNT 222
                          789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.79470121IPR017930Myb domain
SuperFamilySSF466891.08E-1471126IPR009057Homeodomain-like
SMARTSM007173.7E-1374123IPR001005SANT/Myb domain
PfamPF002492.0E-1477121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2077134IPR009057Homeodomain-like
CDDcd001673.01E-1177121No hitNo description
PROSITE profilePS5129428.919122177IPR017930Myb domain
SMARTSM007175.1E-17126175IPR001005SANT/Myb domain
SuperFamilySSF466891.13E-31126220IPR009057Homeodomain-like
PfamPF139218.3E-18130190No hitNo description
CDDcd001672.11E-14130173No hitNo description
Gene3DG3DSA:1.10.10.605.4E-27135179IPR009057Homeodomain-like
PROSITE profilePS5129418.006178228IPR017930Myb domain
SMARTSM007171.7E-13178226IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-22180227IPR009057Homeodomain-like
CDDcd001676.24E-10181222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGTSSSAIS KLEPRRCLGD ISNSSEPKLE PRRCLGDISN SSEADLAIIL VNDRVDHTEK  60
GKAKVNDVPP PRKQIRTWTI EEDDALRAAV ALHKARNWKQ IAAALPNRSD VQCLHRWQKV  120
LNPVLVKGYW TKEEDERMIE LVAMFGVKRW AAIARSLPGR NGKQCRERWC NHLDPQIKRE  180
PWTEAEDMML FLAHKRFGNK WAEISKLLPG RSDNGIKNRW NTAVQRKAEA LEACAASWNK  240
LKPSGSFLSN ETTNGSEVPQ DSLALSDQAT TEVEESSAAQ DLLALTKDYD SEDFVPDFIK  300
RWKDLRLFSY KASDHKCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-65782289159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-65782289159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024540539.12e-67transcription factor MYB3R-5 isoform X3
SwissprotP068767e-64MYB_MOUSE; Transcriptional activator Myb
TrEMBLA0A2R6WTL70.0A0A2R6WTL7_MARPO; Uncharacterized protein
STRINGEFJ276642e-66(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.26e-66myb domain protein 3r-4