PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0049s0076.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 406aa    MW: 46363.1 Da    PI: 6.1618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0049s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05160183123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y C+ Cg+ +++++ Lk+H +  H
  Mapoly0049s0076.1.p 160 YICSMCGRKCKTNYALKKHFKQlH 183
                          89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.6E-779164IPR029060PIN domain-like
PROSITE profilePS5015711.074160188IPR007087Zinc finger, C2H2
SMARTSM003550.009160183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162183IPR007087Zinc finger, C2H2
CDDcd061671.42E-11189309No hitNo description
PfamPF019361.3E-7231314IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10104.6E-7245306IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MPSVAMGLTF TGPFNFHSRL WRYRIDVSHA SAVKLHYGNG GFPRLRGRGS PGSWVRCGLE  60
AGGMAREEEE EVVHEQGISR RTVAVFWDLD NKPPNTVPPY DAALRLKTLA GELGEVVDMV  120
AYANRNAFTH VPARVREERH DRKLLDQLER RGLVEVEQPY ICSMCGRKCK TNYALKKHFK  180
QLHERERQKR MNHLDTLKGK KRVKFLGKVV EKEVKYKEAA RTIIVPKVGY GLATELKRAG  240
VMVRTVESRP QAADEALIQH MTLYINRGLD CLFLVSDDSD FLEILRYAKS RRLYTVVIGD  300
THILRRAADA SFLWEDVASG KALQTARDTF QRWVAEDVLR EELQNQYEDE EDGVWYSDSE  360
DGYLYEDGDA DAYYENDANE EDYDSESSGE EEYQSSFSPS QGKSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387619.11e-110uncharacterized protein LOC112288058
TrEMBLA0A2R6WY750.0A0A2R6WY75_MARPO; Uncharacterized protein
STRINGPP1S95_121V6.11e-110(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-83C2H2 family protein