PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0047s0034.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GRAS
Protein Properties Length: 961aa    MW: 105658 Da    PI: 5.6757
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0047s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.41.7e-945829574373
                 GRAS   4 lLlecAeavssgdlela....qalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           ++++Ae ++s+d + a    +++L+  +e +s dgd +qR+a+yf eAL++r+ +  ++ ++a++ +   +++  + l  ++ f e++P
  Mapoly0047s0034.1.p 582 RIMRFAETIDSKDDKVAlhqrSSALKSAQEFCSVDGDYTQRVAHYFCEALSRRVESRENGNAAAVQEE---PYQLPHDLLEDCKFTEACP 668
                          678999999999888553222679********************************555544444333...45699999999******** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesg..skeeleetgerLakfAeel 172
                          + kf hltaNqa leaveg+e vHiiDf+ +qG+QW aL+qaL s +     ++p ++RiTgv+s + g   +e l +tg+rL++fAe++
  Mapoly0047s0034.1.p 669 YTKFVHLTANQAFLEAVEGAESVHIIDFGTMQGVQWSALIQALVSPAgpnaaAPPKKIRITGVASTKLGpnASEYLLRTGRRLTEFAESM 758
                          ********************************************987555544466*********8887989999*************** PP

                 GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse..sFlerflea 260
                          g+++ef + + +++++l+  ++++++gE++aVnl+lqlh+   e++  +   +++Lklv+sl+Pkvvv+ve ea  n+e  +  +r+l+a
  Mapoly0047s0034.1.p 759 GLQIEFLP-ILEEVQNLDHTSFQIREGEVVAVNLMLQLHQHSGEEGGKR--LPKILKLVQSLKPKVVVLVEYEAAVNTEtsDPQTRLLDA 845
                          ********.7999****************************97666655..59********************877655227799***** PP

                 GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                          +++y a+f +le+ +p++  er+ +Er +lgrei+++ +   ++  ++h ++++W++ ++  GF++v+ s++  +qa+lll ++++  y+
  Mapoly0047s0034.1.p 846 MKHYCAVFQTLEEAMPQNCLERTRIERDILGREIRKMFTSTSDKNSMKHASFAQWKDLFTGLGFQAVKPSHYSFSQARLLLWMYEGP-YQ 934
                          *************************************************************************************77.** PP

                 GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                          + ++ +s+ l W+dr L++vSaW
  Mapoly0047s0034.1.p 935 ILNNPQSISLSWHDRVLITVSAW 957
                          *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.117553939IPR005202Transcription factor GRAS
PfamPF035145.8E-92582957IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MGDSWIDPIH YVRGYNAQEG TLMDLGRQLM QRGTGESVWS AGGLGNWQSS RPNRMAGEHN  60
FGAEDTVMRS FETGPLFGVT STPLSDMTNP RQYQTGGLKQ QQQQQQLLLR ETLNCHTGVH  120
NVENAKPRVV GSSVLDGCVP SRDPNYGMEF SLTTCEADMK FQLERELEFH RREAERRVWR  180
NNFEAIPQVR MSSGPNSVIS SEQNLSNSYV SRGLSTALDR SLPSQLKMGN DYTSRISAAV  240
GGNSGIASEQ QQNSKYSSRH SATLGIHGDI AVQAHAGMVH APRVPDRAAP NNAYVPGGPV  300
GVGQQNCSIS AQLNSNSALG YSDRIMETSS STGYGSQSCE MAADITSVVP SLTYELPDFH  360
SAAFGYSTPV YEERVATNDS TSEPMDCLMG DFQADVVPDA MSPAIAPMFK RTNWDIVNDG  420
FDLLSHGTCP EASGGFPWQS DVLVGDMCHT GHSAINSTSS FLLPTTPKLS SSLELSPASA  480
LDEQTMQEFS LVTKVLSFPS NRPSSTGISR DHERKGVVGA ETISAQGQGG RDSAEKVERI  540
KEESSERKAV VIKEEVSEPA PISKGERGSV EKMDSSMTMM TRIMRFAETI DSKDDKVALH  600
QRSSALKSAQ EFCSVDGDYT QRVAHYFCEA LSRRVESREN GNAAAVQEEP YQLPHDLLED  660
CKFTEACPYT KFVHLTANQA FLEAVEGAES VHIIDFGTMQ GVQWSALIQA LVSPAGPNAA  720
APPKKIRITG VASTKLGPNA SEYLLRTGRR LTEFAESMGL QIEFLPILEE VQNLDHTSFQ  780
IREGEVVAVN LMLQLHQHSG EEGGKRLPKI LKLVQSLKPK VVVLVEYEAA VNTETSDPQT  840
RLLDAMKHYC AVFQTLEEAM PQNCLERTRI ERDILGREIR KMFTSTSDKN SMKHASFAQW  900
KDLFTGLGFQ AVKPSHYSFS QARLLLWMYE GPYQILNNPQ SISLSWHDRV LITVSAWHCL  960
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-7160395823375GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176W4230.0A0A176W423_MARPO; Uncharacterized protein
TrEMBLA0A2R6WYX20.0A0A2R6WYX2_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP67991519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.13e-70GRAS family protein