PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0042s0020.4.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 425aa    MW: 46024.3 Da    PI: 8.2779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0042s0020.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-083656526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          C +++r G+C+yG++C++ H+
  Mapoly0042s0020.4.p 36 VCIYYQR-GYCSYGSKCRYEHV 56
                         6******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.098330IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7428IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4831IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6623158IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-53157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-53455IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-53655IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-63656IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.314197224IPR000571Zinc finger, CCCH-type
SMARTSM003567.2198223IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.33E-11254330No hitNo description
Gene3DG3DSA:3.30.40.105.5E-8261326IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.03E-4265326No hitNo description
PfamPF000971.8E-5266323IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008911.53266324IPR001841Zinc finger, RING-type
SMARTSM001841.6E-5266323IPR001841Zinc finger, RING-type
PROSITE patternPS005180290299IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.85353382IPR000571Zinc finger, CCCH-type
SMARTSM003560.16355381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4359383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAQRSRVLCK YFMHGACYKG ESCEFSHNWD DPASNVCIYY QRGYCSYGSK CRYEHVKVQN  60
PEVASAMAKV LKAGTIASAS SSPAGSASTP VISPVSVRKS VSLGGSSKGL SSTSKVSPAA  120
STPVAASNPI TIKSPSVIPA GLPSLANSYH GEGSGKFSST SSSPSSRWQN TPKTLDDELY  180
SIEQEIEVAR LLHEDDPADE PICTLGLTGS CTRGSACTHV HGDLCPTCGK NCLHPLRAEE  240
REEHLRVCAQ NRKRLEAMLI SQDIECVVCL ERVLSKPALA ERKFGILSGC DHPFCISCVR  300
SWRNGSHPPG MDLKTIIRGC PVCRTVSHYV IPSLTWFSSP DEKAEIVNGY KKKLSSLDCR  360
YFDQGNGNCP FGTSCFYKHA YKDGRLEEIK LRHLGAADGS AVITKNIRLS DFIGKLDLDP  420
RRSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375821.11e-144E3 ubiquitin-protein ligase makorin-like isoform X1
TrEMBLA0A2R6X1I50.0A0A2R6X1I5_MARPO; Uncharacterized protein
STRINGXP_002526765.11e-137(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-100C3H family protein