PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0042s0020.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 492aa    MW: 53723.2 Da    PI: 7.9044
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0042s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08103123526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C +++r G+C+yG++C++ H+
  Mapoly0042s0020.1.p 103 VCIYYQR-GYCSYGSKCRYEHV 123
                          6******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0427097IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-57196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-77295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-47598IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-598124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.66298125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5101122IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6103123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4103122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.314264291IPR000571Zinc finger, CCCH-type
SMARTSM003567.2265290IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.65E-11321397No hitNo description
Gene3DG3DSA:3.30.40.107.6E-8328393IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.35E-4332393No hitNo description
PROSITE profilePS5008911.53333391IPR001841Zinc finger, RING-type
SMARTSM001841.6E-5333390IPR001841Zinc finger, RING-type
PfamPF000972.2E-5333390IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180357366IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.85420449IPR000571Zinc finger, CCCH-type
SMARTSM003560.16422448IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MIKSKFGTFF GEVRTCPLPL YFLPLEERSS LEYGDQTDIW FVCRLCVSDN TPISTSSYHI  60
DTIFLLAMVW TSKVLCKYFM HGACYKGESC EFSHNWDDPA SNVCIYYQRG YCSYGSKCRY  120
EHVKVQNPEV ASAMAKVLKA GTIASASSSP AGSASTPVIS PVSVRKSVSL GGSSKGLSST  180
SKVSPAASTP VAASNPITIK SPSVIPAGLP SLANSYHGEG SGKFSSTSSS PSSRWQNTPK  240
TLDDELYSIE QEIEVARLLH EDDPADEPIC TLGLTGSCTR GSACTHVHGD LCPTCGKNCL  300
HPLRAEEREE HLRVCAQNRK RLEAMLISQD IECVVCLERV LSKPALAERK FGILSGCDHP  360
FCISCVRSWR NGSHPPGMDL KTIIRGCPVC RTVSHYVIPS LTWFSSPDEK AEIVNGYKKK  420
LSSLDCRYFD QGNGNCPFGT SCFYKHAYKD GRLEEIKLRH LGAADGSAVI TKNIRLSDFI  480
GKLDLDPRRS G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X1J10.0A0A2R6X1J1_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-99C3H family protein