PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0031s0161.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 684aa    MW: 74574.1 Da    PI: 6.7143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0031s0161.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.15.1e-16431477455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr l+P       +K++Ka+iL  A+eY+k+Lq
  Mapoly0031s0161.2.p 431 SHVLAERRRREKLNDRFMSLRALVPFV-----TKMDKASILGDAIEYVKQLQ 477
                          7999**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-4620188IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.49E-19427491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.473427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-17430481No hitNo description
Gene3DG3DSA:4.10.280.103.6E-19431490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-13431477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-19433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAGAGKRNSS TLIEVPKATL RGQLQAAVQS IKWTYTAFWQ QSKQKEVLVW GDGYYNGAIK  60
TRKTVQAAEL SQEELGMQRT RQLRDLYETL STAGDGNQST TRRPSAALTP EDLTETEWFY  120
LLCMSCSFSP ENGLPGKALA QGRHLWLTET NEASPEVFTR SLLAKTARIQ TVLCIPLCKG  180
VVEFGTTELG DTLLQQQQQQ QPGRSGANVD QHGASAAWLS TSSPWASVNV SHQDSMVTFS  240
HEAARDSAHG HGHGLHDDAV AMLVDDQKSM GASAKSWDLL SDHIDGLPGS DISLDPYVGS  300
GTNSSSDLML LSARHPSSQP LQHLRRFGSQ RAAAHSLDHA EPDPLTRYDR QRQQPLGSTS  360
AFVDWRMTAG SAPKAPLPGN QQWMLKNALF HITHLYSAPR SDEATLVSAD NRSRSGGPRK  420
PAGAQEDLNV SHVLAERRRR EKLNDRFMSL RALVPFVTKM DKASILGDAI EYVKQLQKRI  480
QELELRDKQA ESSHLPRSHA DDLSKSQLGD STPKTSPSET FNSSHFEIVS NGNHMTGIET  540
NVNVSFDGAS NSDPKVPSGD NEMKSSPSLA SDREDPGFCN SDGESNATQA KRLDGVKANV  600
KVTADDDVSL ELNCPWRKTL LVDVLRTLND LQLDVFVVQA STSDGTLATV FKGKMRESTH  660
SLTATKTKLQ TALEETAAGM GSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A2e-181918947216Transcription factor MYC3
4ywc_A2e-181918947216Transcription factor MYC3
4ywc_B2e-181918947216Transcription factor MYC3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435440ERRRRE
2436441RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6X7W50.0A0A2R6X7W5_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.12e-76bHLH family protein