PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0023s0075.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ERF
Protein Properties Length: 539aa    MW: 58256.4 Da    PI: 4.2784
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0023s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.4e-21198247255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdps+     r +lg+++taeeAa+a+++a++ ++g
  Mapoly0023s0075.1.p 198 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEEAAQAYDKAARTIRG 247
                          8********.**********965...4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.762198255IPR001471AP2/ERF domain
CDDcd000187.15E-34198255No hitNo description
Gene3DG3DSA:3.30.730.108.0E-32198255IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-22198255IPR016177DNA-binding domain
PfamPF008477.8E-14198247IPR001471AP2/ERF domain
SMARTSM003801.3E-38198261IPR001471AP2/ERF domain
PRINTSPR003676.0E-11199210IPR001471AP2/ERF domain
PRINTSPR003676.0E-11221237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MPGPQTYPKI INTLIKSNAK VCLKSSKRDY LTDSDDEWTG PKPQVCPKRV RVICTDPDAT  60
DSSSDEESNF RANHLTKYAY RRHVQEIDIR ADCSPSSSDS EDELSYHSVF TARAMQCGFN  120
CASLSGNAVY ESSSKQSQGT WFSKKKVDKA TSKKVVKTVK KKVDGIEKTS TSKFFSKSAN  180
SKSLAGRGRG GDEGKTHKYR GVRQRPWGKW AAEIRDPSKG VRLWLGTYDT AEEAAQAYDK  240
AARTIRGPQA HTNFAGLSDS DKADDPTDGE LNEALKCHSG PTAEVEIIEL KSEAETEGEG  300
EDCPFNQDLD DPIHLSSGVA SEVSLSSSKS TGEPSCSSPR KGSNAGSSSN KGSSSQALIT  360
CEDFPTVVMT DEECGFLVCS PSSVLDCYPT PLSECSPGRQ SSEVNTSSSS SVADDGDLNY  420
LHSDMGSDGY QVDGESDDIS AQLQIADEPE YTDSDMDLKD AAPEGLQEDS TDFVQTYLTE  480
PEGQDEFVFD FPPCETSSAM SFDFTGFDLL GDGGEDIADF IFEPDSGWFG NLTDISVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21199254359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XCA80.0A0A2R6XCA8_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.19e-21ERF family protein