PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Mapoly0023s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 533aa MW: 56068.8 Da PI: 7.2585 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.2 | 3.7e-10 | 87 | 112 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +G +C+F+H+p Mapoly0023s0030.1.p 87 GEPDCTYYMRTGLCGFGMSCRFNHPP 112 6899********************97 PP | |||||||
2 | zf-CCCH | 37.7 | 3.4e-12 | 132 | 157 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ Mapoly0023s0030.1.p 132 GQPECQYYLKTGTCKFGATCKYHHPR 157 5799********************96 PP | |||||||
3 | zf-CCCH | 34.4 | 3.8e-11 | 178 | 203 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rtG Cky +CkF+H++ Mapoly0023s0030.1.p 178 GEKECAYYMRTGSCKYNVTCKFHHPQ 203 7899********************97 PP | |||||||
4 | zf-CCCH | 36.6 | 7.8e-12 | 346 | 372 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G +Ck++H++ Mapoly0023s0030.1.p 346 PGQPECQYYMKTGDCKFGITCKYHHPK 372 5789*********************96 PP | |||||||
5 | zf-CCCH | 31.9 | 2.2e-10 | 395 | 417 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C f+ r+G+Ck+G++CkF H+ Mapoly0023s0030.1.p 395 QPCTFYTRYGICKFGPTCKFDHP 417 69********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.1E-5 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.263 | 85 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-7 | 87 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-5 | 90 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-4 | 91 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-6 | 130 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 130 | 158 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 133 | 157 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 136 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.404 | 176 | 204 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-9 | 178 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 179 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 182 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.68 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-9 | 347 | 372 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 349 | 374 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 391 | 418 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.784 | 391 | 419 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 394 | 419 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-8 | 395 | 417 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 533 aa Download sequence Send to blast |
MEYYAGQGAP SSFAGLEGTV SDPNTGAVLS SLSRSEDWHL RHGAPSPAST AAETGLEEAV 60 WQQMTGMTLQ PQEGMEAPQG PYPERSGEPD CTYYMRTGLC GFGMSCRFNH PPNRKLAAAV 120 ARNKGEYPER LGQPECQYYL KTGTCKFGAT CKYHHPRDKA GSTGRVQLNI LGLPLRPGEK 180 ECAYYMRTGS CKYNVTCKFH HPQPATVGVV PMSGSSIYAA PGPSSPAPQP YQGLPTWPIA 240 RTPYMPSPRI QGPSNYGAMI LPAQGLVGLP AGWSTYQGPV GPMASPEGQQ HPIGTGFVYT 300 QQSDPVSGGV HGTFPQFMPA TTAMGLPALQ PQQSLGSQKD NFPERPGQPE CQYYMKTGDC 360 KFGITCKYHH PKDRATPSPT CGLSPIGLPL RPGAQPCTFY TRYGICKFGP TCKFDHPLGG 420 LPYSPSASSL TDMPVAPYPI GSSPTTLAPS SSSSETPQEA PPQPFVSSSS NEPAAVAEEP 480 PGHNQSREGA NDAPQSSGTT GPILAQAGQS LSMSGSSPGT GSANPADILG AS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373414.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373415.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373416.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 1e-145 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A176VZ11 | 0.0 | A0A176VZ11_MARPO; Uncharacterized protein | ||||
STRING | PP1S102_155V6.1 | 1e-169 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1247 | 17 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-123 | zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Mapoly0023s0030.1.p |