PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0020s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | MYB_related | ||||||||
Protein Properties | Length: 388aa MW: 41133.4 Da PI: 10.0409 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4e-14 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Mapoly0020s0013.1.p 97 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVQTRTPTQVASHAQKY 141 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 9.125 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 2.4E-4 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 19.91 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-17 | 92 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-18 | 93 | 145 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 94 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 94 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.50E-10 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 1.3E-11 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0030307 | Biological Process | positive regulation of cell growth | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:2000469 | Biological Process | negative regulation of peroxidase activity | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MTRRCSHCGH NGHNSRTCPD RCPDRGVRLF GVRLTTNDGA ANMRKSVSMG NLTHYANASN 60 PPSTPEHSES GAGAEGYVSD GLVQTSSNAR ERKKGVPWTE EEHRLFLLGL QKLGKGDWRG 120 ISRNFVQTRT PTQVASHAQK YFIRQSNLNK RKRRSSLFDI VTESGPRPMV EEPLSKSPDM 180 SAPLHQLSLS SGGLFNHGAF FEQQGMPQLN RGPDMFPPMA PMSGVSMRSY PIGAHLQQAI 240 PLPVMSLGTA EQTGESTVSY AGESVTVLPR PVAISAASAS GPGSAALAGQ LGIGGPSMYP 300 YHIWPGIAPG SYSKPMSSSP SSSSKVVKPT ACPAKIDEGS EMAKLTLGPS PSAEPSNLTL 360 KFSGHSAFVS KTSFNSNNLG PSTISVV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00551 | DAP | Transfer from AT5G47390 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390573.1 | 1e-115 | transcription factor KUA1-like isoform X1 | ||||
Refseq | XP_024390574.1 | 1e-115 | transcription factor KUA1-like isoform X1 | ||||
TrEMBL | A0A2R6XE05 | 0.0 | A0A2R6XE05_MARPO; Uncharacterized protein | ||||
STRING | PP1S70_203V6.1 | 1e-114 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-61 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0020s0013.1.p |