PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0016s0064.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C2H2 | ||||||||
Protein Properties | Length: 285aa MW: 32708.7 Da PI: 8.9807 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.6 | 2.5e-06 | 111 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +C+k+F++ ++L +H+ + H Mapoly0016s0064.2.p 111 WQCLYCKKTFRSEDYLDKHMDNrH 134 58******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0026 | 111 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.099 | 111 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 113 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MAILGNDRKR VLPLLLCLVV LALHVIDCSS AILDRRPVYD SRHEDENETQ DGKVHCSRAR 60 SRTASQILDE YLLPFLEKEQ YNLSSACRLN PENNMFKDQE LQKDNVRPSQ WQCLYCKKTF 120 RSEDYLDKHM DNRHYAMLDL NSKRCLADIC GAVHCDHADS VAKATTKKRC NRAAVIKNKH 180 LCEALANECF PSKEGATALR LNEFFLRQFC DSHTCDGSAK HFPRGSGRRK NKSLYMALCL 240 FVIILLGIFY LAVYLYQRDM NGDASSLKRL RQHPILKAQK SKKF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6XFY8 | 0.0 | A0A2R6XFY8_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 8e-74 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0016s0064.2.p |