PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0014s0224.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family SBP
Protein Properties Length: 659aa    MW: 69916 Da    PI: 7.9394
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0014s0224.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.41.8e-42225302178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cq+egC+adls+ak+yhrrhkvCe+hskap+v++ g++qrfCqqCsrfh+lsefDe+krsCr+rLa+hn+rrrk+q+
  Mapoly0014s0224.1.p 225 MCQAEGCKADLSTAKHYHRRHKVCEQHSKAPNVIAGGQTQRFCQQCSRFHSLSEFDEGKRSCRKRLADHNRRRRKPQP 302
                          6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-36218287IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.522223300IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.58E-39224303IPR004333Transcription factor, SBP-box
PfamPF031106.2E-32226299IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MNPSDNNSEQ QGEPSWPTEN WDQPGVAGLE NSRPYTGNRL DWDWDNPMIL AQHPGGGASD  60
GDADRKSPIT GSMASSLRAY TSGILSSGFP SNFSQNPMGI FSSSGIRSFA GMDSTSISTS  120
SGMHGAMSSA SIPGIPGLAP TSGGHGDMRP SMDQRRRYFG AMDLDQKGHS NEIHVKREEV  180
CAADGHGARI GLNLGVRTYF STEDTAAGRL GKRHRSNSPG SQVPMCQAEG CKADLSTAKH  240
YHRRHKVCEQ HSKAPNVIAG GQTQRFCQQC SRFHSLSEFD EGKRSCRKRL ADHNRRRRKP  300
QPTASTGGTT AESVALKSED QDNRTSASTD AKSMLMHLKK SGSPSSTSME DSDDKTGSAG  360
NNLQLRTSTG FGRNEERPPH AVMLNSQPSP MSGSDAQALL SAMSIAPPVI LQSAKRQLSI  420
LPGNSQEAAV YQQFLQGVGQ SGPNLSLSSL GGGLGLGNQV QRSTSSQNYN GIDPVPPVPW  480
LLRPNGSRSD LTQQTVNRPT MNLQHLMSDK NGQGATHQVT SAGATSSAQV YSTSIQDLLP  540
SMHSRDMSGS DWMLGNLAGQ NRDSSAPFGS STLNMSGGQL EGHQMLALLS ENPAAIREGT  600
SGSGQQARAV EFLQQHGSDG GDGTRAGGTD LKFPELQALR PGPGSFGTSI YDSHHNIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-30217299284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282299KRSCRKRLADHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378734.10.0squamosa promoter-binding-like protein 14 isoform X3
TrEMBLA0A2R6XI080.0A0A2R6XI08_MARPO; Uncharacterized protein
STRINGPP1S252_40V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-48squamosa promoter binding protein-like 8