PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0009s0116.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 656aa    MW: 71660.3 Da    PI: 6.5458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0009s0116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.7e-06338360426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + C  f   GtC++ ++C+F H+
  Mapoly0009s0116.1.p 338 RVCVEFVTRGTCSREGNCRFKHD 360
                          6799999***************7 PP
2zf-CCCH22.42.1e-07407427626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C +f++tG C +G+ C+F+H+
  Mapoly0009s0116.1.p 407 CFDFFKTGKCDRGADCRFSHS 427
                          668*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073802.18E-4512244No hitNo description
PROSITE profilePS5010311.817334362IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-4334361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.652366394IPR000571Zinc finger, CCCH-type
SMARTSM003560.014367393IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385401429IPR000571Zinc finger, CCCH-type
SMARTSM003560.013403428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5405430IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4406428IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5407427IPR000571Zinc finger, CCCH-type
PfamPF046771.7E-32436549IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541972.38E-10438538IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.109.0E-9440556IPR011146HIT-like domain
PfamPF046765.3E-13578652IPR006767Cwf19-like protein, C-terminal domain-2
Gene3DG3DSA:3.30.428.109.0E-9626647IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MSGSGSTAPR ILIAGDVCGR LAALYKRVAS VNKSNGPFDA LLCVGQFFPS DPSGIEDMQK  60
YIDGTEPIPL PTFFVGNYGE GANLLLSASK LKAAQAGLSM EGIPVCQNLT WLIGSGILNL  120
HGLRIAYLGA KYIPDLYQDA KGAAAAGAHH EDDVDALRAF ADDKAVTDLF LSNEWPLGVT  180
NGADLVNVPP NVNAATGTMI AADLATELKP RYHFAGTEGV FYAREPYLNP DADHCTRFIG  240
LATVGNDKKQ KFLHALSPMP ASTMALSDLA IRPPNLTVSP YEIARIESKS AGSRATNLRN  300
GLAKDTSRGG KHPVDVDGQY WRYDVGQTKR QRRDDGDRVC VEFVTRGTCS REGNCRFKHD  360
LGDGTPIPKG ACFEFVTKGS CERGADCRYR HSLENPERRE PLPAGVCFDF FKTGKCDRGA  420
DCRFSHSLDN PAPPRPTGPC WFCLSSPEVS THLVLSVGDH CYCALAKGPV VQGHVLLLPI  480
EHFPSTVSLA FDVLDEMQKY IDGLRECHRS QGNAIVIFER YIQLRAGTHA HIQIIPIPEA  540
EAQSARGAFE TAAMQAGFEF QSLPSGKSHR QAREALWELV QNRNYFYVEL PDQARLVHPL  600
DGGAKMSMQF GREVVATLLN KPERGDWKAC VMSKDEETNM AEEFKQLFTN FDPML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399682.10.0zinc finger CCCH domain-containing protein 59-like isoform X1
TrEMBLA0A2R6XLU90.0A0A2R6XLU9_MARPO; Uncharacterized protein
STRINGPP1S15_97V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP534877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.13e-07C3H family protein