PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0005s0067.3.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 1117aa    MW: 121254 Da    PI: 10.3832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0005s0067.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07417436525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           C++f++ G C++G++C+F H
  Mapoly0005s0067.3.p 417 VCNDFLK-GRCQRGGSCRFLH 436
                          6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.352412439IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-4414438IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-5417436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5417438IPR000571Zinc finger, CCCH-type
PfamPF082365.1E-510371115IPR013257SRI, Set2 Rpb1 interacting
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034968Biological Processhistone lysine methylation
GO:0005694Cellular Componentchromosome
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MDMEDDFAVT PPTIERKPTF ERRSVVSSPK RERKSGFSSG VELPSQTSER RVGPASPGFE  60
RRSRFSSPPS EKKVAPTSAA ADRTTQGGLE SQVLELKVGA SSSVPVNQEQ SQHGTNVWSA  120
ASSDLENLVV EREKGSQVSD TSKPERESAL PEQPRRRDSR RRTGFDRPCM EDVSPQSSPP  180
RFGEPKDNQR DSAASFEQSE RKGVPPNGHA DVVIKPSRWG PPESGPGHHG NRDLVSDKGP  240
GTGEASSVAK AHKRSEASHL RGEESLTKDQ SQSPKFSAKP SRASDDTSAR DMDKPKSRSV  300
SDSLAVDEFG RLLRQGGSDS DGEGHHGGGK KRRRSMSRSR TRSRSPGDVR RKRWSPSRSP  360
RRRGRRSRSW SGSPRRQRSR SRTPPREGRW TGEGRGDRGF SDRGGRRWGR GGGPPNVCND  420
FLKGRCQRGG SCRFLHEESN GIADDQGGRW SGGRGRGRGR GRSGREAAEE GDRNWAVKSG  480
ELPRSRKPWS SNDRNTDDDS REKKLIEDMK KQEAESSSDE SWEQKKGDAA MAPGSTVTAE  540
QGVSADKLPM QSEKESAVPV TAQHVKSSTD YMCEALSPSA SFPSSQSNQV AQQTSAFSNL  600
VSSPQQPSYP SPSRHQYNST LNAHVPQHPS LSMSPSAQSQ QMKYTIGHSH QPQHSFPSSQ  660
QSGYSPNVPH KSGFSVNRPP QQPTFTPPTV TYSGNPSMPS QQPLPFASLP MLRPQLSFSS  720
PQQQNFAPLP LSMAMSMPMP MPMPMSVPLS SGHTGLLSRT LGMNTPPQML QVSMGTNLAT  780
RLGYSWTAPA MGPPVSYGLP PQQPLQQPPP PPPPPPPPPP QPQTQGLPSQ VSVPPPIPYQ  840
YAPPLPPSYA AASYSTIAAQ VMAPSSISSS EQYDPLADSL EPGPPGAGDK KGQGSFNQNR  900
QQDDGSRQTS ADQWKLHAPG ENTPLMTNAG EVVLENVSPG LPSHVENVRS NIVVLENVSP  960
RRPMHMVMEN VSPTNVGSSF NVNASSMNYS GSHQAVTMES VSPCPDTNPT GDGQRDVAHG  1020
SKEQKKKDKD GRILNLIRKA VAEHVKDLLK PTWKEGQMSK DAFKTIAKKA VDKVMGALEA  1080
KGSIPKSQEK LDLFMDTSKP KIAKLVQGYV DKYVKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331352RRRSMSRSRTRSRSPGDVRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XQM00.0A0A2R6XQM0_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.18e-18C3H family protein