PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0005s0067.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C3H | ||||||||
Protein Properties | Length: 1117aa MW: 121254 Da PI: 10.3832 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 417 | 436 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C++f++ G C++G++C+F H Mapoly0005s0067.2.p 417 VCNDFLK-GRCQRGGSCRFLH 436 6******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.352 | 412 | 439 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-4 | 414 | 438 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-5 | 417 | 436 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 417 | 438 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF08236 | 5.1E-5 | 1037 | 1115 | IPR013257 | SRI, Set2 Rpb1 interacting |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034968 | Biological Process | histone lysine methylation | ||||
GO:0005694 | Cellular Component | chromosome | ||||
GO:0018024 | Molecular Function | histone-lysine N-methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1117 aa Download sequence Send to blast |
MDMEDDFAVT PPTIERKPTF ERRSVVSSPK RERKSGFSSG VELPSQTSER RVGPASPGFE 60 RRSRFSSPPS EKKVAPTSAA ADRTTQGGLE SQVLELKVGA SSSVPVNQEQ SQHGTNVWSA 120 ASSDLENLVV EREKGSQVSD TSKPERESAL PEQPRRRDSR RRTGFDRPCM EDVSPQSSPP 180 RFGEPKDNQR DSAASFEQSE RKGVPPNGHA DVVIKPSRWG PPESGPGHHG NRDLVSDKGP 240 GTGEASSVAK AHKRSEASHL RGEESLTKDQ SQSPKFSAKP SRASDDTSAR DMDKPKSRSV 300 SDSLAVDEFG RLLRQGGSDS DGEGHHGGGK KRRRSMSRSR TRSRSPGDVR RKRWSPSRSP 360 RRRGRRSRSW SGSPRRQRSR SRTPPREGRW TGEGRGDRGF SDRGGRRWGR GGGPPNVCND 420 FLKGRCQRGG SCRFLHEESN GIADDQGGRW SGGRGRGRGR GRSGREAAEE GDRNWAVKSG 480 ELPRSRKPWS SNDRNTDDDS REKKLIEDMK KQEAESSSDE SWEQKKGDAA MAPGSTVTAE 540 QGVSADKLPM QSEKESAVPV TAQHVKSSTD YMCEALSPSA SFPSSQSNQV AQQTSAFSNL 600 VSSPQQPSYP SPSRHQYNST LNAHVPQHPS LSMSPSAQSQ QMKYTIGHSH QPQHSFPSSQ 660 QSGYSPNVPH KSGFSVNRPP QQPTFTPPTV TYSGNPSMPS QQPLPFASLP MLRPQLSFSS 720 PQQQNFAPLP LSMAMSMPMP MPMPMSVPLS SGHTGLLSRT LGMNTPPQML QVSMGTNLAT 780 RLGYSWTAPA MGPPVSYGLP PQQPLQQPPP PPPPPPPPPP QPQTQGLPSQ VSVPPPIPYQ 840 YAPPLPPSYA AASYSTIAAQ VMAPSSISSS EQYDPLADSL EPGPPGAGDK KGQGSFNQNR 900 QQDDGSRQTS ADQWKLHAPG ENTPLMTNAG EVVLENVSPG LPSHVENVRS NIVVLENVSP 960 RRPMHMVMEN VSPTNVGSSF NVNASSMNYS GSHQAVTMES VSPCPDTNPT GDGQRDVAHG 1020 SKEQKKKDKD GRILNLIRKA VAEHVKDLLK PTWKEGQMSK DAFKTIAKKA VDKVMGALEA 1080 KGSIPKSQEK LDLFMDTSKP KIAKLVQGYV DKYVKA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 331 | 352 | RRRSMSRSRTRSRSPGDVRRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6XQM0 | 0.0 | A0A2R6XQM0_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 8e-18 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0005s0067.2.p |