PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113493.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 615aa    MW: 67553.2 Da    PI: 4.8986
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113493.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.91.6e-1062486153374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++L++cA+  + ++  +a + L rlse +s++gdp++R++++fteAL +r++   ++  k+l++ +     s++ +  +k++++++P+ kf+hlt
  XP_010113493.1 248 KALIDCARLTE-SEPDRAVKQLIRLSESVSEQGDPIERVTFHFTEALYNRVSL--QSEKKSLAVYDGV---SEDFTLPYKALNDACPYSKFAHLT 336
                     79******655.57888889999****************************98..3333344444443...8899999***************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+Rp g+p ++Ri g+ + + g   + +l +tg+rL +fA+ l+++fef++ v   + +l
  XP_010113493.1 337 ANQAILEATERASKIHIVDFGIVQGIQWAALLQALATRPTGKPnKIRISGIPALALGrsPAASLFATGNRLCEFAKLLELNFEFEP-VLIPIGEL 430
                     ***************************************66665*********998898999************************.6889**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + +++rv+++E+laVn++lql++llde+    +   + L+l ksl+Pk++++ e ea++n+  F++rf +al+yy+a+f+sle +l+r+s er  
  XP_010113493.1 431 NESSFRVEEDEVLAVNFMLQLYNLLDETPIAVQ---TALRLAKSLNPKIITLGEYEASLNELGFMKRFKNALRYYTAVFESLEPNLSRDSPERLQ 522
                     *************************88877777...9********************************************************** PP

            GRAS 285 vErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     vEr l+gr+i+ vv  e+   +rer+e  e+W+  +e++ F+pv ls++a++qak ll +++ s  y++ e+   ++ l W+d pL++vS+Wr
  XP_010113493.1 523 VERLLFGRRISGVVGPEEPGiKRERMEGRERWKILMENSDFQPVGLSHYAVSQAKILLWNYNySSLYSLVESAPGFLsLAWNDVPLLTVSSWR 615
                     ****************999889****************************************9999***999888888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.671220593IPR005202Transcription factor GRAS
PfamPF035145.6E-104248615IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QNHQNQQLTG LSPFSLSPWA AATTTTTHHT  60
MSNTPNLAYG LTGPGFHDPF QVAGGSDTGE PGFQFPHLEQ HSAGFRFSDF CAGPGGEFDS  120
DEWMDSIIGG GDSTDSSNLP SGCDAWQSNA DFVLYGSDPF ATACPSRLSV PCSSPSDLNR  180
VLFAESQKSP NPLQQQVSPW IPPPAPPSPP MAAKDTKSAN PPPPHKSDAI AGVSTSSPEI  240
ESAPPILKAL IDCARLTESE PDRAVKQLIR LSESVSEQGD PIERVTFHFT EALYNRVSLQ  300
SEKKSLAVYD GVSEDFTLPY KALNDACPYS KFAHLTANQA ILEATERASK IHIVDFGIVQ  360
GIQWAALLQA LATRPTGKPN KIRISGIPAL ALGRSPAASL FATGNRLCEF AKLLELNFEF  420
EPVLIPIGEL NESSFRVEED EVLAVNFMLQ LYNLLDETPI AVQTALRLAK SLNPKIITLG  480
EYEASLNELG FMKRFKNALR YYTAVFESLE PNLSRDSPER LQVERLLFGR RISGVVGPEE  540
PGIKRERMEG RERWKILMEN SDFQPVGLSH YAVSQAKILL WNYNYSSLYS LVESAPGFLS  600
LAWNDVPLLT VSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462456153375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010113493.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113493.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLW9T1870.0W9T187_9ROSA; Uncharacterized protein
STRINGXP_010113493.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein