PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010113163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 128aa MW: 14728.9 Da PI: 10.0007 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.7 | 1.5e-29 | 7 | 92 | 42 | 128 |
NAM 42 vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++P++ + ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s + +glkk+Lv+y+g+a kg+ktdW+mhe+rl XP_010113163.1 7 YKPEEVS---NVGDKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVkePHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 92 5677775...45899*************************************97433445***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.146 | 1 | 107 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-13 | 5 | 92 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-30 | 13 | 97 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MISGYLYKPE EVSNVGDKEW YFFCIRGRKY RNSIRPNRVT GSGFWKATGI DKPIYSVKEP 60 HDCIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPNGKTTT AANVFPNTKE NIGNYQEAVR 120 LIYPMSYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-25 | 2 | 92 | 52 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-25 | 2 | 92 | 52 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-25 | 2 | 92 | 52 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-25 | 2 | 92 | 52 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-25 | 2 | 92 | 55 | 145 | NAC domain-containing protein 19 |
3swm_B | 4e-25 | 2 | 92 | 55 | 145 | NAC domain-containing protein 19 |
3swm_C | 4e-25 | 2 | 92 | 55 | 145 | NAC domain-containing protein 19 |
3swm_D | 4e-25 | 2 | 92 | 55 | 145 | NAC domain-containing protein 19 |
3swp_A | 4e-25 | 2 | 92 | 55 | 145 | NAC domain-containing protein 19 |
3swp_B | 4e-25 | 2 | 92 | 55 | 145 | NAC domain-containing protein 19 |
3swp_C | 4e-25 | 2 | 92 | 55 | 145 | NAC domain-containing protein 19 |
3swp_D | 4e-25 | 2 | 92 | 55 | 145 | NAC domain-containing protein 19 |
4dul_A | 4e-25 | 2 | 92 | 52 | 142 | NAC domain-containing protein 19 |
4dul_B | 4e-25 | 2 | 92 | 52 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010113163.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010113163.2 | 1e-84 | transcription factor JUNGBRUNNEN 1, partial | ||||
Swissprot | Q9SK55 | 5e-47 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | W9T395 | 4e-91 | W9T395_9ROSA; NAC domain-containing protein 42 | ||||
STRING | XP_010113163.1 | 6e-92 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-49 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Entrez Gene | 21383821 |