PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112997.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 294aa    MW: 34165.1 Da    PI: 6.3481
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112997.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.6e-2432119186
        trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W   e+++Li +r eme+++++++      + k lW++vs+km+ergf r+p qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  XP_010112997.1  32 QWGPAETKELILIRAEMERDSSSSSsttvskRSKVLWDAVSSKMAERGFARTPDQCKCKWKNLLNRYKGKETSDPEN----GRQCPFFDELH 119
                     7*******************9986334444399************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1782595IPR017877Myb-like domain
SMARTSM007170.00562997IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-53097IPR009057Homeodomain-like
PfamPF138377.3E-2232121No hitNo description
CDDcd122035.48E-1932102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMYGWGDDEE DSLGGTGIGP MMAVMSASAQ GQWGPAETKE LILIRAEMER DSSSSSSTTV  60
SKRSKVLWDA VSSKMAERGF ARTPDQCKCK WKNLLNRYKG KETSDPENGR QCPFFDELHA  120
LFTERSKNMQ RLLLESEMGS PRSRKKTKKS SAGQSSDEFS ENEEDKDNTD EEKPARSNHR  180
KRKAEKTALD KSSKAANTGS TNSGTDVQEM VKEFFQQQLR MEKQWMEIME RRAYEQQLFE  240
QQWRQSMEKL ERERLMIEQA WREREEQRRI REESRAERTD ALLTTLLNNF IHES
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112997.10.0trihelix transcription factor GT-3b
TrEMBLW9SMK50.0W9SMK5_9ROSA; Trihelix transcription factor GT-3b
STRINGXP_010112997.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.13e-28Trihelix family protein