PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010112330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | AP2 | ||||||||
Protein Properties | Length: 647aa MW: 70935.7 Da PI: 7.2499 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 8.9e-17 | 172 | 221 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_010112330.1 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 221 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.6 | 6.1e-13 | 264 | 314 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_010112330.1 264 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 314 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.260 | 2.2E-4 | 106 | 186 | IPR008979 | Galactose-binding domain-like |
SuperFamily | SSF81995 | 4.18E-5 | 138 | 160 | No hit | No description |
Pfam | PF00847 | 8.1E-9 | 172 | 221 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-16 | 172 | 230 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-32 | 173 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 173 | 229 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.65E-11 | 173 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-17 | 187 | 230 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-8 | 264 | 314 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.59E-25 | 264 | 324 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-16 | 264 | 323 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-32 | 265 | 328 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-15 | 265 | 322 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 265 | 322 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-6 | 266 | 277 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-6 | 304 | 324 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MLDLNLNVLS ADSAYQNDGD SAMFVEKVPQ GSGTQMDESG TSNSSIVNAD ASSNGGDDDS 60 CSTRAGGSEV YTFNFDILKV GAENDVVVTK EFFPMTTGGA NVDLKDWQGQ SSSSSAPSRK 120 KWIELGFDQS GSGEVRMPQQ QQQQQQQQQQ QQQQQQQQQP KKSRRGPRSR SSQYRGVTFY 180 RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDLNQM 240 KNLTKEEFVH ILRRHSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE 300 AARAYDKAAI KCNGREAVTN FEPSTYEGDM IPEANSEGGN HNLDLNLGIS PPSFGNGQKE 360 NEGRIQFRPG PYDVHGRKFV GMENHTSATL GDPPFKGLVM TSEQPLLLNG VYPSYFPSEE 420 RATEKRIALG SSQGLPSWKM HGQVTATQVP LFSTAASSGF SFSAAPPSAA ILPSKPLNPA 480 TLNLCFTSSA TAPTNSPQYY YQFSLFFPSH EPPHNSLLIA QSSRPPSCPL SPVLSRRTDK 540 DAASLPPQET HLRPYHRHPS PGLPPEAVAT PLPLHLNTLT AAITPLDFAS YASFASLFTF 600 TSSLPSDTWP SYASFIEPLR HLKMVGRNSP PTANCGSRDS LSGLATN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010112330.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024031787.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | Q9SK03 | 1e-119 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | W9SIG3 | 0.0 | W9SIG3_9ROSA; Ethylene-responsive transcription factor | ||||
STRING | XP_010112330.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-116 | related to AP2.7 |
Link Out ? help Back to Top | |
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Entrez Gene | 21394466 |