PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111761.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31634.9 Da    PI: 4.4239
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111761.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.4e-2168121356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  XP_010111761.1  68 KKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQSRQVAVWFQNRRARWK 121
                     5678*************************************************9 PP
2HD-ZIP_I/II131.92.5e-4267159193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqv+lLE+sFe+e+kLeperK++la++Lglq rqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ ++++ke+e+L++e+++
  XP_010111761.1  67 EKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQSRQVAVWFQNRRARWKTKQLERDYDLLKSTYDSLLANFDSIHKENEKLKAEVAS 159
                     69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1955125IPR009057Homeodomain-like
PROSITE profilePS5007117.91263123IPR001356Homeobox domain
SMARTSM003897.6E-1966127IPR001356Homeobox domain
PfamPF000465.8E-1868121IPR001356Homeobox domain
CDDcd000862.02E-1868124No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2269130IPR009057Homeodomain-like
PRINTSPR000314.4E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000314.4E-6103119IPR000047Helix-turn-helix motif
PfamPF021833.8E-18123165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MESGRLFFDP TSACHGGNML FLGNGDSVFR GPRSSIMSME ESSKRRPFFS SPEDLYDEEY  60
YDEQLPEKKR RLTPEQVHLL EKSFEAENKL EPERKTQLAK KLGLQSRQVA VWFQNRRARW  120
KTKQLERDYD LLKSTYDSLL ANFDSIHKEN EKLKAEVASL TEKLQAKEEG AGAPPPAQKS  180
ESLAGDMTEI MGLQFGVKAE DRLSTGSGGS AVVDEEGPQL VDSGDSYFQS VQYPGCMGTV  240
DGVHSEEDDG SDDGRSYFPD VFAAAEQQQE GENLECWWVW S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111761.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111761.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022831e-100HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLW9S8V40.0W9S8V4_9ROSA; Homeobox-leucine zipper protein HAT5
STRINGXP_010111761.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-88homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]