PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111464.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 565aa    MW: 62081.8 Da    PI: 8.3186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111464.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-1659105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+ Ede l  av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
   XP_010111464.1  59 KGGWTPHEDETLRSAVAAYKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                      688*****************************.************986 PP
2Myb_DNA-binding59.67.1e-19111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++++v ++G   W++Ia+ ++ gR +kqc++rw+++l
   XP_010111464.1 111 KGPWTQEEDDKIIELVLKYGATKWSLIAKSLP-GRIGKQCRERWHNHL 157
                      79******************************.*************97 PP
3Myb_DNA-binding50.16.4e-16163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT  E++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_010111464.1 163 KDAWTLNEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.59754105IPR017930Myb domain
SuperFamilySSF466894.67E-1856119IPR009057Homeodomain-like
SMARTSM007176.1E-1458107IPR001005SANT/Myb domain
PfamPF002492.7E-1459105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2261117IPR009057Homeodomain-like
CDDcd001674.35E-1262105No hitNo description
PROSITE profilePS5129432.365106161IPR017930Myb domain
SuperFamilySSF466896.36E-31108204IPR009057Homeodomain-like
SMARTSM007171.6E-17110159IPR001005SANT/Myb domain
PfamPF002494.3E-18111157IPR001005SANT/Myb domain
CDDcd001671.78E-15113157No hitNo description
Gene3DG3DSA:1.10.10.601.9E-26118164IPR009057Homeodomain-like
PROSITE profilePS5129420.816162212IPR017930Myb domain
SMARTSM007176.5E-14162210IPR001005SANT/Myb domain
PfamPF002494.3E-14163206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-22165212IPR009057Homeodomain-like
CDDcd001671.07E-10165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MGGVKLEECC LENKQSTAAS SSSVSEGSGS VFLKSPGICS PASMSPTHRR TSGPIRRAKG  60
GWTPHEDETL RSAVAAYKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVLKYG ATKWSLIAKS LPGRIGKQCR ERWHNHLNPD IRKDAWTLNE ELALMNAHRI  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPVNKSNPQ NGQKDTNKTA  240
ATKSPLVCSN KELDSSVHTT GTTVMYKIDE DRKHQLESPG PPSNLDGSSS VLPNESADSE  300
AEQSKPGPSN MDPSSSNSDA VLKFETYAIS KEHRIENCVM NCEPKSLNCG IDNGGFDAKT  360
NEDKVARTPL PYQAWTHGCL YYEPPQLEGC TPLDSSPFSS PVSFFTPPCV KGNGLSLPSP  420
ESVLKMAAMS FPNTPSILRK RKSKAQTPSL PNKIQKVDEE SDRNLLSASS EQDSLEMPEN  480
RDGSLCESPT RHGTNSIAPN GKAFNASPPY RLRSKRTAMF KSVEKQLEFA FDKEREGNIK  540
STELSAMASS PVAEDCSHAT KLGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-65582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-65582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111464.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111464.20.0transcription factor MYB3R-3 isoform X2
SwissprotQ6R0321e-158MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLW9SWG80.0W9SWG8_9ROSA; Myb-related protein 3R-1
STRINGXP_010111464.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-143myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]