PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010110935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 28885.2 Da PI: 9.8105 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.8 | 1.5e-34 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp G+rF+Ptdeelvv+yLk+kv + +l++ vi+++d+++++Pw+Lp +v +++ yfF+k+++ + ++k+ + sgyWk gk++ ++++ XP_010110935.1 16 LPIGYRFRPTDEELVVHYLKRKVFSIPLPA-LVIPDFDVFQTDPWTLPGEV---KEKRYFFHKQKRDVNIMSKKRVNAGSGYWKPIGKERLIVAS 106 699*************************99.78***************554...4578****99998766555555899**************99 PP NAM 96 ..kgelvglkktLvfykgrapkge...ktdWvmheyrl 128 +++ vg++kt+vf g++p+ + + +W+mhe++l XP_010110935.1 107 elNNQPVGIRKTMVFCGGNRPDNHhhhNHRWLMHEFHL 144 889999**********77655543223899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-41 | 10 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.293 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-21 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEEKQKLLMS SGGLKLPIGY RFRPTDEELV VHYLKRKVFS IPLPALVIPD FDVFQTDPWT 60 LPGEVKEKRY FFHKQKRDVN IMSKKRVNAG SGYWKPIGKE RLIVASELNN QPVGIRKTMV 120 FCGGNRPDNH HHHNHRWLMH EFHLVRPGPT PNSVHLISSM ELKECWVVCG VFQKKRRPKK 180 KNGTNSERKH IMMTEVTRPK CSVGPPTPSL SSCSGITEVS TLINGAIDYD YDDDQEESSS 240 KINISHSDDN KP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-27 | 14 | 180 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-27 | 14 | 180 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-27 | 14 | 180 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-27 | 14 | 180 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-27 | 14 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-27 | 14 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-27 | 14 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-27 | 14 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-27 | 14 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-27 | 14 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-27 | 14 | 180 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-27 | 14 | 180 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-27 | 14 | 180 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-27 | 14 | 180 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 179 | QKKRRPKK |
2 | 173 | 178 | KKRRPK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010110935.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010110935.1 | 0.0 | NAC domain-containing protein 83 | ||||
TrEMBL | W9S6J5 | 0.0 | W9S6J5_9ROSA; NAC domain-containing protein 68 | ||||
STRING | XP_010110935.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-41 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Entrez Gene | 21389127 |