PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110925.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 687aa    MW: 75530 Da    PI: 5.9263
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110925.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.57.9e-1333126861374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn............sseelaalkl 83 
                     lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla + ++   + ++s+ts  +            s e l+++++
  XP_010110925.1 312 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAATLTTSTTTTTTSSTSAATtkppaftpfppnSLEILKIYQI 406
                     68****************************************************944333333322222222246899999999999999999** PP

            GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                      ++++P++kf+h+taNqaI ea+e e+rvH+iD+di qG QWpa++qaL++Rp+g+p lRiTgvg+    s +++eetg+ La++A++l+vpfef
  XP_010110925.1 407 VYQACPYIKFAHFTANQAIFEAFEAEDRVHVIDLDILQGYQWPAFMQALSARPSGAPFLRITGVGP----SIDSVEETGRCLAELAHSLHVPFEF 497
                     ******************************************************************....9************************ PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                     ++ v ++ledl++++++ + gEalaVn+v +lhr++    +      ++L+++++  P+++++veqea+hn++ Fl rfleal+yysa+fdsl+a
  XP_010110925.1 498 HA-VGEQLEDLKPHMFNRRVGEALAVNSVNRLHRVP--ANC----LGNILSMIRDQAPNILTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDA 585
                     **.7*******************************9..444....446*********************************************** PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                     ++p +s +r+kvE+ ++++ei+n+vaceg er++rhe+lekWr+ +e  GF+ vpls +a++q k ll  ++ dgyr+ ee+g+l+lgW+dr+++
  XP_010110925.1 586 TFPVDSVQRAKVEQYIFAPEIRNIVACEGPERTARHERLEKWRKVMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEEKGCLLLGWQDRAII 680
                     *********************************************************************************************** PP

            GRAS 369 svSaWr 374
                     ++SaWr
  XP_010110925.1 681 AASAWR 686
                     *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.112286666IPR005202Transcription factor GRAS
PfamPF035142.7E-130312686IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MGSSSIKRES SCTTLQQITT SPPNESSSSV SESKINNIVK PSTTPTSSDN IMEQTSLAPP  60
SLDFPPIKFE LDGDVEVQSP DNSIMWDSLF SDQFESAADF MIMSPVRNLP PPPSPSPYNY  120
HYAQAMQGQS LSGCSPPRSS SQLGAFSSST STKGKGLSPL HKVFTSINNQ YMQQPENLAL  180
PAIEEFLDDY SNQREGFGAA YDTTTSSKMS GHVVGSSSQT SYDVPSGSNN VINDQVQAAG  240
AMLDCSLSFC EASASSTAVP LSQQLQQERQ QEKKQHQQQH HHLHLHNLNH GPMMPTLPIG  300
GFEMEQDSGL QLVHLLLACA EAVSKEDYML ARRYLHHLNR VVTPLGDSMQ RVASCFTEAL  360
SARLAATLTT STTTTTTSST SAATTKPPAF TPFPPNSLEI LKIYQIVYQA CPYIKFAHFT  420
ANQAIFEAFE AEDRVHVIDL DILQGYQWPA FMQALSARPS GAPFLRITGV GPSIDSVEET  480
GRCLAELAHS LHVPFEFHAV GEQLEDLKPH MFNRRVGEAL AVNSVNRLHR VPANCLGNIL  540
SMIRDQAPNI LTLVEQEASH NGPYFLGRFL EALHYYSAIF DSLDATFPVD SVQRAKVEQY  600
IFAPEIRNIV ACEGPERTAR HERLEKWRKV MEGKGFRGVP LSANAVTQSK ILLGLYSCDG  660
YRLTEEKGCL LLGWQDRAII AASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-9531968525377Protein SCARECROW
5b3h_D3e-9531968525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010110925.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110925.10.0DELLA protein RGL1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLW9S6I40.0W9S6I4_9ROSA; Uncharacterized protein
STRINGXP_010110925.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-96RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]