PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110779.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 517aa    MW: 58371.5 Da    PI: 9.8944
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110779.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.23.9e-1516101798
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + +l++++l lpkkf++ +g  k+ s  + l+ + g +W++ l  +k+ ++++l +GW eF+k   L+ g f+ Fk++g+s+f  +v++++
  XP_010110779.1  16 LETALRKKMLELPKKFVRLYG--KTLSSSVCLRPRCGSKWKIGL--EKREDKVWLCQGWPEFAKLYALDFGHFLFFKYKGNSQF--YVSICD 101
                     467788899********9999..458889***************..**********************************9***..***998 PP
2B333.38.7e-112653154498
                     -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +W++ l  +kk+g+++l++GW eFvk   + +g  + F+++g+s+f   v+v++
  XP_010110779.1 265 SEWRLHL--EKKDGKVWLQRGWPEFVKHYAIGVGHLLFFRYKGSSKF--EVSVCD 315
                     79*****..*********************************99999..888886 PP
3B334.14.9e-11426509996
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                      v++ ++ +lp +f+++h ++  +s ++tl   ++rsW v++    ++ +y+l+kG  +F ++n +  gD++  +l+++  ++e v+kv
  XP_010110779.1 426 TVTRIHNTRLPATFVQRHIEQ--RSPMVTL-KVESRSWYVRF--LSCKTGYFLGKGYCRFLRENSISLGDVCAYELNEKnAQGEVVLKV 509
                     567778899********9544..3335554.4578*******..999999*************************99665777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.67E-199105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.88710103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-1910104IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-1311103IPR003340B3 DNA binding domain
CDDcd100171.28E-1311101No hitNo description
PfamPF023625.3E-1218101IPR003340B3 DNA binding domain
SMARTSM010190.0089238317IPR003340B3 DNA binding domain
PfamPF023627.5E-8265315IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-10265316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.939266317IPR003340B3 DNA binding domain
CDDcd100173.36E-7266315No hitNo description
SuperFamilySSF1019367.26E-10266319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-14418513IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.461418515IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-15418514IPR015300DNA-binding pseudobarrel domain
CDDcd100178.63E-10421513No hitNo description
SMARTSM010194.6E-4423515IPR003340B3 DNA binding domain
PfamPF023621.3E-8426508IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MASGSSTDFG FFKLILETAL RKKMLELPKK FVRLYGKTLS SSVCLRPRCG SKWKIGLEKR  60
EDKVWLCQGW PEFAKLYALD FGHFLFFKYK GNSQFYVSIC DISACEIHYP SIPANLNDPN  120
VYVPKKEKTI GYVESLQMFG SSSSEEKYIP PSSPPQKRTR TNASGECQKE GTHRIRKVKT  180
ECTSDDDSGI HSWGAAEVTR SQHRQGKGVA KKVSAPIERR SESSEVTGEK MASITIRFQI  240
LSSGGGTGQR TNGRIERKSL TLPYSEWRLH LEKKDGKVWL QRGWPEFVKH YAIGVGHLLF  300
FRYKGSSKFE VSVCDISNCE VDEPDASGPK KGEIDVDGNT IKMLESSDDD DSVHIIEHLS  360
SQEEYLQPSS PPHKRMGTSG KASKEKSATK RGGAAEARGK HRSYRHSKAF KAASKIFSEK  420
PIFVATVTRI HNTRLPATFV QRHIEQRSPM VTLKVESRSW YVRFLSCKTG YFLGKGYCRF  480
LRENSISLGD VCAYELNEKN AQGEVVLKVS IFRQAEY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010110779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030784.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLW9SGP80.0W9SGP8_9ROSA; B3 domain-containing protein
STRINGXP_010110779.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-25B3 family protein